Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03242 ATGGCTGTGACGATTGACAGACATGAGGGGTTTGGGCCCTTTAGCCGATCCCAGAGATGCAAACTCCAATCTTACGGTCACCTTGATCCGAACGTTGTCGAACATAGCAAAAGTGGTGGTACTTTTTCACACTCCATTGAACTAGCATTTGAAGCCTATAATATTCACCGCAGTTTCTCCACTCCATGCCTCCCCCTAACCACACTGATAGGGGAAGAGCTCACTTGTCACCCTCCAAGGATTGAGATTGTTCGTGGAAGTGGAGCTCCAGTACATGCTCTAGTTGTTGAAGTTGCCATAGCTTTGGCCTCAGGTATCAAACCAATACCCATCCCGAGTGGCCTAGGTGGTGCCTATGCTTTCCGCAACCAAAATGGCACCAACATCGCTGTAGCAAAGCCAGTAGATGAAGAGCCTTTTGCCTTCAACAACCCAAAAGGCTTAGGGGGTCAAATGCTCGGCCAACCTGGCCTCAAGAAATCTATTCGCATTGGTGAAACTGGTATCCGAGAGTTAGCTGCTTATCTTCTTGATCACGGAGGCCTTGCTGCCGTGCCTCCTACGGCTTTAGTCAAATTTTCTAATGCTGCATTCTTTGTCACTTCCAATGCAGCAGCATCTGCTCTTCCAATGCCTAAAGTTGCCTCTCTCCAACGCTTTGTTGGTCATGGTTTTGATGCAGGAGAGTTGGGTCCTTCTTTCTTCTCAGTTGCTTCAGTCCACAACATTGGGATCCTTGACATTAGGATCATGAACCTTGATAGACATGCAGGGAATATGCTTGTGGCCGAGCATGACACTAATAATGCTAGCTATGGTGGTACTGTTGCTGACCTCGTTCCCATCGACCATGGCTTTTGCCTCCCTGAGTGGCTGGATGATCCATATTTTGAGTGGCTACATTGGCCACAAGCCTCTATTCCTTTCTCTGATTACGAACTTGAATACATTTCCAAACTCGATCCCTTCAAAGATGCAGAGGTTTTAAGAACTGCCATTCCTTTACTGGGGGAATCCGCAATACGTGTTCTTATTGTTTGCACCGTTTTGTTGAAGCAAGCTGCTGCTGCTGGCCTTTGCCTTGCTGAAATAGGCCAAATGATGACTAGGAAATTTCGTGAAGGTCAAGAGTTACCGAGTGAAATGGAAAACATCTGCTTAAAAGTGAAGGCTAGCATCCACACCAAAAACCGCACAGAACAAGGGTCGAAATGGGAAGGTGCTCAAATTTCCTTCGGAGACCTCAACCAAGTCCAGTGGGAAGCGTTCTTGGAGGTTTTTGGTGAACTTTTGCGCAGTGTTTTTGAGGACAAGAAGTGCAACGGCAAAAAATTGGAACATCTTGGAAGTTACTGA 1356 0.4676 MAVTIDRHEGFGPFSRSQRCKLQSYGHLDPNVVEHSKSGGTFSHSIELAFEAYNIHRSFSTPCLPLTTLIGEELTCHPPRIEIVRGSGAPVHALVVEVAIALASGIKPIPIPSGLGGAYAFRNQNGTNIAVAKPVDEEPFAFNNPKGLGGQMLGQPGLKKSIRIGETGIRELAAYLLDHGGLAAVPPTALVKFSNAAFFVTSNAAASALPMPKVASLQRFVGHGFDAGELGPSFFSVASVHNIGILDIRIMNLDRHAGNMLVAEHDTNNASYGGTVADLVPIDHGFCLPEWLDDPYFEWLHWPQASIPFSDYELEYISKLDPFKDAEVLRTAIPLLGESAIRVLIVCTVLLKQAAAAGLCLAEIGQMMTRKFREGQELPSEMENICLKVKASIHTKNRTEQGSKWEGAQISFGDLNQVQWEAFLEVFGELLRSVFEDKKCNGKKLEHLGSY 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03242 451 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 48 443 IPR044571 -
Vimu6g03242 451 Pfam Phosphatidylinositol 3- and 4-kinase 116 364 IPR000403 -
Vimu6g03242 451 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 105 401 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03242 Vimu-Chr6 29019885 29021240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03242 1 411 Acyl Lipid Metabolism Gene Families AT2G40850 58.273 7.52e-157 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03242 - - gmx:100809677 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03242 6 29019885 29021240 Vimu6g03242 6 29019885 29021240 ECH