LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1625	ATGGCTGTGACCATTGACCGACATCATGGATTTAAGCCATTTAGCCGATCCCAGAGATGCAAACTCCAATCCTTTGGTCACCTTGATCCCAACATTCTTGAACTTAGCCAGCAAACTGGTACTTTTTCACACTCCTTTGAACTAGCATTTCAAGCCGATAATATTCACCGCAGCTTCTCCACTCCATGCCTCCCCCTAGCCACGCTTGTAGGGGAAGACCTCACCTCTCACCACCCAAGGATTGAGATTGTTCGTGGAAGTGGAGCTCCAGTACATGCTCTGGTTGTTGAGGTTGCCATAGCTATGGCCTCAGGTGTTCACCCTATACCCCTCCCAAGTGGCCTAGGTGGCGCCTACGTTTTCCGGAACCAAAATGGTAACAACATTGCTGTAGCAAAGCCAGTGGATGAAGAACCTCTAGCCTTGAACAACCCAAAAGGCTTAGGGGGTCAAATGCTGGGCCAACCTGGCTTAAAGAAATCAATCCGGATTGGTGAAACTGGCATACGAGAATTAGCTGCTTATCTCCTTGATCATGGAGGCCTTGCTGGTGTGCCTCCTACTGCTTTAGTCAAATTCTCTAATGCTGCATTCTTTGTTACCACTGATGCAGCCACTGTTCCTTCTCACATGCCTAAAATTGCCTCACTCCAACGCTTTGTTGGTCATGGTTATGATGCAGGAGAGTTGGGTCCATCTTTCTTCTCAGTTGCTTCAGTCCACCAAATTGGGATCCTAGACATTAGGATTCTGAACCTTGATAGACATGCAGGGAATATGCTTGTGATGAAACATGACCATAATAATAGTAGTTATGTTGATGGAGTTGCTGACCTTGTTCCCATTGACCATGGTTTTTGCCTACCTGAGTGGCTGGATGATCCATATTTTGAGTGGCTGCACTGGCCACAAGCCTCCATTCCTTTCTCTGACTATGAACTTGAGTACATTTCCAAACTTGATCCCTTTAAAGATGCCGAGATTTTAAGAACTGACCTTCCTTCATTGAGGGAGTCCTCTATTCGTGTTCTTATTGTTTGCACCATTTTCTTGAAGCAAGCTGCTGCTGCTGGCCTTTGTCTTACTGAAATAGGCCAAATGATGACTAGGAAATTTTGTGGTGGTGAAGAGTCACCAAGTGAAATGGAGAACATTTGCTTAAAAGTCAAGGCTAGCATCCCTCGTGGTTCCAACAATGACAATCGCAAAGAAGAAACTGAAGAAGGGTCTAAATGTGAAGTTGGTGGCATTTCCTTGGGAGACCTGAACCAAGGTGAATGGGAAGCGTTTTTGGAGAATTTTAGTGAGCTTTTGCATGGAGTTTTCGAGGATAAGAAGTGCAAAAGCAAAAGTTGGAACACCATGGAAGTTACTGAACTTTAG	1383	0.4519	MAVTIDRHHGFKPFSRSQRCKLQSFGHLDPNILELSQQTGTFSHSFELAFQADNIHRSFSTPCLPLATLVGEDLTSHHPRIEIVRGSGAPVHALVVEVAIAMASGVHPIPLPSGLGGAYVFRNQNGNNIAVAKPVDEEPLALNNPKGLGGQMLGQPGLKKSIRIGETGIRELAAYLLDHGGLAGVPPTALVKFSNAAFFVTTDAATVPSHMPKIASLQRFVGHGYDAGELGPSFFSVASVHQIGILDIRILNLDRHAGNMLVMKHDHNNSSYVDGVADLVPIDHGFCLPEWLDDPYFEWLHWPQASIPFSDYELEYISKLDPFKDAEILRTDLPSLRESSIRVLIVCTIFLKQAAAAGLCLTEIGQMMTRKFCGGEESPSEMENICLKVKASIPRGSNNDNRKEETEEGSKCEVGGISLGDLNQGEWEAFLENFSELLHGVFEDKKCKSKSWNTMEVTEL	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1625	460	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 8	412	451	-	-
	Ssu4g1625	460	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 8	1	408	-	-
	Ssu4g1625	460	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA	1	408	IPR044571	-
	Ssu4g1625	460	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA	412	451	IPR044571	-
	Ssu4g1625	460	Pfam	Phosphatidylinositol 3- and 4-kinase	115	363	IPR000403	-
	Ssu4g1625	460	ProSiteProfiles	Phosphatidylinositol 3- and 4-kinases catalytic domain profile.	105	401	IPR000403	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1625	Ssu-Chr4	28198170	28199552	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g1625	1	415	Acyl Lipid Metabolism Gene Families	AT2G40850	59.811	1.23e-162	469

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1625	-		-	gmx:100809677	755.362