Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1058 ATGGTGAATCCGGGATTGTTTTCTGCGAATAAGTCTACGAATTCGGTGAAAGTAAGCTTTCGGATACCGTATTTCACCCAATGGGGTCAGAGCTTGCTGGTGTGTGGCTCTGTACCAGTTCTTGGTTCCTGGAATGTGAAGAAGGGTGTGTTGCTCAGCCCCGTTCATCAAGGGGCTGAGCTCATATGGGGTGGAAGTATCACTGTGCCAAAAGGGTTCCAATGCCAGTACAGCTATTATGTTGTAGATGATAACAAAAATGTACTGAGATGGGAGATGGGGAAGAAGCGTGAACTGGTACTCCGTGAAGGGATTCAGAGTGGCCAGGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGATGCACTTCCTTTCAGAAGTGCTTTCAAAGATGTCATTTTTCGGCAAAGCTGGGACTTGAGCGATGCAACCGTAGGAGTAAACCACATTAATGTTGAACCGGAAGGAGAAGCTATCTTGGTCCAATTCAAAATTTCCTGCCCAAATATTGAGAAAGACACATCAATATATGTCATTGGCAGCAATACAAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCAATCAAATATAGATATGGAAAATATGACAGGAGTGGGAACTTTTCTATAGAGAGTGGTCCAAATCGAGAAGTCTATGCTAACTCCCCAAGGAATGAGGCGAAATATATTTTTCTTTCAGATGGCATGATGCGGGAAATACCTTGGCGTGGTGCTGGTGTAGCAGTCCCCATGTTTTCTGTTAGGTCAGAATCTGATCTGGGTGTTGGGGAGTTTCTTGACCTTAAGTTGCTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTCTTTGCATTGCATCCATTGTACCTGAGAGTACAAGCACTTTCTAAGAACATACCCGAGGAGATCAAGAAAGAGATTGAAAAGGCAAAACAGCAATTGGATGGGAAGGATGTTGATTATGAGGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTCGCTCAAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTAAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCTTATGCTGCTTTCTGTTTCCTGCGGGACTTCTTTGAAACATCAGATCGCACTCAATGGGGTTGTTTTGCTCATTACTCAGAGGATAAGCTAGAGAAACTTGTATCCAAGGACAGCCTGCATTATGAGATAATTTGCTTCCACTACTATGTTCAATACCATTTACATTTACAATTATCAGAAGCTGCAGAATATGCAAGAAAGAAGGGAGTGATACTAAAGGGAGATCTTCCTATTGGAGTTGACAGAAACAGTGTGGATACCTGGGTTTATCCAAATTTGTTTCGAATGAACACTTCTACTGGGGCACCTCCAGATTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTGACACAGATGGCAAAATATTTTACAGCTTACAGGATTGATCACATTTTGGGATTCTTCCGAATTTGGGAACTTCCGGATCATGCTGCGACAGGTCTTGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCAGGAAGAACTTGAACGAGAAGGAATATGGGACTTTAATCGCCTAAGTTACCCATATATTAAGCGGGAACTATTACAGGAAAAATTTGGTGATGCTTGGACTTTTGTTGCAACAACTTTTCTAAAGGAAATTGACAAGAACTTCTATGAGTTCAAGGAGGATTGCAACACAGAGAAAAAAATTGCTTCCAAACTGAAAACTTGTGCAGAAAGTTCTCTCTTGTTGGAGAGTGTAGACAAATTGCAGCGTAATCTCTTTGATCTTTCACAGAATATAGTTCTAATCCGAGATCCAGAGGATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCATAAGTTTCCAGGATTTGGATGATCATAGCAAGAATGTTCTCAAACGATTATACCATGACTACTATTTCTGTCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTGGCCTGTGGGGAAGATTTGGGTCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCCAATGAACCTGATCTGGAATTTGGTATTCCTTCTAAGTACAGCTACATGACGGTATGTGCCCCTTCATGTCATGACTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGAAGACTCCGGTTTTTCAAGAATGTGATGGAGTCCGATGGGTTGCCGCCCGATCAATGTGTTCCAGAAGTTGCACATTTTGTTATAAGGCAGCATTTTGAAGCCCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGTTAGCATTAAAAGAAGAATATACAACACGCCCTGCAACAGAGGAGACAATCAATGACCCTACGAATCCGAAGCACTATTGGAGATTCCGTGTGCATGTGACTTTGGAATCATTGATCAAGGATAATGACCTCCAAACCACCATCAAAGATCTCGTCGGTTGGAGTGGAAGATCACTCCCTAAGGAAGACGACTCAGAAATAGAAGCGAGCCCAGTGTCGGTGTTGTCAGCAGCAGAAGCTCTTTCTGAGAAGCAGAAGTTTGCCAGTACCACGGAAAAGCCTGTTCTTGTCAAATAA 2898 0.4224 MVNPGLFSANKSTNSVKVSFRIPYFTQWGQSLLVCGSVPVLGSWNVKKGVLLSPVHQGAELIWGGSITVPKGFQCQYSYYVVDDNKNVLRWEMGKKRELVLREGIQSGQEIEFRDLWQTGSDALPFRSAFKDVIFRQSWDLSDATVGVNHINVEPEGEAILVQFKISCPNIEKDTSIYVIGSNTKLGQWKVENGLKLSYFGESVWKAECVMQRSDFPIKYRYGKYDRSGNFSIESGPNREVYANSPRNEAKYIFLSDGMMREIPWRGAGVAVPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSKNIPEEIKKEIEKAKQQLDGKDVDYEATMATKLSIAKKVFAQEKDLILNSSSFKEFFSENEGWLKPYAAFCFLRDFFETSDRTQWGCFAHYSEDKLEKLVSKDSLHYEIICFHYYVQYHLHLQLSEAAEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAATGLVGKFRPSIPLSQEELEREGIWDFNRLSYPYIKRELLQEKFGDAWTFVATTFLKEIDKNFYEFKEDCNTEKKIASKLKTCAESSLLLESVDKLQRNLFDLSQNIVLIRDPEDPRKFYPRFNLEDTISFQDLDDHSKNVLKRLYHDYYFCRQENLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPDLEFGIPSKYSYMTVCAPSCHDCSTLRAWWEEDEERRLRFFKNVMESDGLPPDQCVPEVAHFVIRQHFEAPSMWAIFPLQDLLALKEEYTTRPATEETINDPTNPKHYWRFRVHVTLESLIKDNDLQTTIKDLVGWSGRSLPKEDDSEIEASPVSVLSAAEALSEKQKFASTTEKPVLVK* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1058 965 Gene3D Glycosidases 265 595 - -
Gso19g1058 965 SUPERFAMILY (Trans)glycosidases 265 918 IPR017853 -
Gso19g1058 965 Gene3D Glycosidases 720 924 - -
Gso19g1058 965 SUPERFAMILY Starch-binding domain-like 158 245 IPR013784 GO:0030246
Gso19g1058 965 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Gso19g1058 965 PANTHER - 12 925 - -
Gso19g1058 965 Gene3D Immunoglobulins 7 119 IPR013783 -
Gso19g1058 965 Gene3D Immunoglobulins 153 254 IPR013783 -
Gso19g1058 965 Pfam Starch binding domain 160 247 IPR002044 GO:2001070
Gso19g1058 965 Pfam Starch binding domain 16 107 IPR002044 GO:2001070
Gso19g1058 965 CDD CBM20_DPE2_repeat1 17 117 IPR034840 GO:2001070
Gso19g1058 965 CDD CBM20_DPE2_repeat2 162 258 IPR034841 GO:2001070
Gso19g1058 965 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 154 267 IPR002044 GO:2001070
Gso19g1058 965 Pfam 4-alpha-glucanotransferase 272 900 IPR003385 GO:0004134|GO:0005975
Gso19g1058 965 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Gso19g1058 965 SMART CBM_20_2 159 252 IPR002044 GO:2001070
Gso19g1058 965 SUPERFAMILY Starch-binding domain-like 13 117 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1058 Gso-Chr19 38316096 38328836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1058 16 927 Glycoside Hydrolase AT2G40840 74.151 0.0 1456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1058 K00705 - gmx:100793021 1976.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1058 19 38316096 38328836 Gso3g1044 3 35217403 35229509 GST