Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1342 ATGGCGAATTCTGGATTGTTTTCTGGGAACAAGTCTGTGAATTCAGTGAAAGTGAGCTTTAAGATACCATATTTTACCCAATGGGGTCAGAGTTTACTGGTGTGTGGCTCTGTGCCAGTGCTTGGTTCCTGGAATGTGAAGAGGGGTGTGTTGCTTAGCCCTATTCATCAAGGGAATGAGCTTATATGGGGTGGAAGCATCAAAGTTCCTAGAGGGTTCCAATGCCAGTACAGCTATTATGTTGTGGATGATAACAAAAATGTACTGAGAGGGGAGATGGGGAAGAAGCGCGAACTGGTGCTCCCTGAAGGTATTCAGAGTGGCCAGGAGATTGAGTTCCATGATCTTTGGCAGACTGGCTCAGATGCCCTCCCTTTCAGAAGTGCTTTCCGAGATGTCATTTTTCGGCAAAGCTGGGATTTGAGCGTCAACAGAAACACAGGAGTCAACAACATTACTTTTGAACAGGAAGCATCTATTGTGATCCAATTCAAAATTTGTTGCCCAAATATTGAGAAAGACACATCAATATATGTGATTGGTAGCAATATAAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCAATAAGATATAGATATGGCAAATGTAGCAGGTCTGGGAATTTTTCTATAGAGAATGGTCCAAATCGAGAAGTATTTATTAACTCCTCGAGGAATGAGGCAAAATATATCATTCTTTCAGACGGCATGATGCGGGAAACGCCTTGGCGTGGTGCTGGGGTAGCAATCCCCATGTTTTCTGTTAGGTCGGAATCTGATCTGGGTGTTGGAGAGTTTCTTGACCTTAAGTTACTAGTTGACTGGGCTGTAGCTTCCGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTCTTTGCATTGCATCCCTTGTATCTGAGAGTACAAGCACTTTCTGAGAATATATCAGAGGAGATCAAGAAAGAGATTGAGGAGGCAAAACAGCAGTTGGATGGGAAGGATGTTGATTATGAAGCTACAATGGCTACTAAGCTCTCAATTGCTAAGAAAATTTTCACTCAAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTCTGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCTTATGCTGCTTTTTGTTTCCTGCGGGACTTTTTTGAAACATCAGATCGCAGTCAATGGGGTCGTTTTGCTCATTATTCAGAAGATAAGCTGGAGAAACTTGTATCCAAGGAAAGCCTGCATTATGAGATAATATGCTTCCACTACTATGTTCAATACCATCTACATTTACAATTATCAGAAGCTGCTGAATATGCAAGAAAGAAGGGAGTAGTACTGAAGGGAGATCTTCCTATCGGAGTTGACAGAAACAGTGTGGATACCTGGGTTTATCCAAACTTGTTCCGAATGAACACTTCTACTGGGGCACCTCCAGATTATTTTGATAAAAATGGCCAGAATTGGGGTTTTCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGCTTGGTGGCGAGCTAGATTGACACAGATGGCAAAATATTTTACAGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATCTGGGAACTTCCAGATCATGCCGCAACAGGTCTAGTTGGAAAATTCCGGCCATCTATTGCTCTTAGTCAGGAAGAACTTGAAAGAGAAGGAATATGGGACTTTAATCGCTTGAGTCGCCCATATATTAGGCAGAAACTATTACAGGAAAAATTTGGTGCTGCTTGGACTTTTGTTGCAACAACTTTTTTAAATGAATTGGATAAGAACTGTTATGAGTTCAAGGAGGACAGCAACACGGAGAAAAAAATTGCTTCCAAACTGAAAACCTGTACTGAAAGTTCTCTCTTGTTGGAGAGTGAAGACAAAATGCTGCGCAATCTCTTCAATCTTATACAGAATATAGTTCTAATCCGAGATCCAGAGGATCCAAGAAAATTTTATCCTCGCTTCAACCTTGAAGATACCTCAAGTTTCATGGATTTGGATGACAAAAGCAAGAATGTTCTCAAAAGATTATACTATGAGTACTATTTCCATCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAACTCATCCGACATACTGGCCTGTGGGGAAGATTTGGGCCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAATTGGGATTAGTTGGGTTGCGCATTCAACGCATGCCCAATGAACCTGGTCTGGAATTTGGTATTCCTTCTCAATACAGCTACATGACGGTATGTGCCCCATCCTGTCATGACTGTTCCACCTTGCGTGCATGGTGGGAAGAAGATGAAGAAAGAAGACACCGGTTTTTCAAGAATGTGGTGGAGTCTGACGAGTTGCCACCTGATCAATGTGTGCCAGAAGTTGCCCATTTTATTATAAGGCAACATTTTGAAGCCCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGTTAGCATTAAAAGGAGAATACAGAACACGCCCTGCAACAGAGGAGACAATCAACGACCCTACCAATCCAAAGCATTATTGGAGATACCGTGTGCATGTGACTCTGGAATCACTGATTAAGGATAAGGAGCTTCAAACCATCATCAAAGATCTTGTACGTTGGGGTGGAAGATCACTCCCTCAGGAAGATTTAGAAATAGAAGGGAGCATAGCGTCAAAATTGTCAGTATCAGAAGCTGTTTCTGAGAAGCAGAAGATTGCCAGCAATGGAGAAAAGCCTCGTGTCGTCAAATAG 2895 0.4173 MANSGLFSGNKSVNSVKVSFKIPYFTQWGQSLLVCGSVPVLGSWNVKRGVLLSPIHQGNELIWGGSIKVPRGFQCQYSYYVVDDNKNVLRGEMGKKRELVLPEGIQSGQEIEFHDLWQTGSDALPFRSAFRDVIFRQSWDLSVNRNTGVNNITFEQEASIVIQFKICCPNIEKDTSIYVIGSNIKLGQWKVENGLKLSYFGESVWKAECVMQRSDFPIRYRYGKCSRSGNFSIENGPNREVFINSSRNEAKYIILSDGMMRETPWRGAGVAIPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSENISEEIKKEIEEAKQQLDGKDVDYEATMATKLSIAKKIFTQEKDLILNSSSFLEFFSENEGWLKPYAAFCFLRDFFETSDRSQWGRFAHYSEDKLEKLVSKESLHYEIICFHYYVQYHLHLQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAATGLVGKFRPSIALSQEELEREGIWDFNRLSRPYIRQKLLQEKFGAAWTFVATTFLNELDKNCYEFKEDSNTEKKIASKLKTCTESSLLLESEDKMLRNLFNLIQNIVLIRDPEDPRKFYPRFNLEDTSSFMDLDDKSKNVLKRLYYEYYFHRQENLWRQNALKTLPVLLNSSDILACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPGLEFGIPSQYSYMTVCAPSCHDCSTLRAWWEEDEERRHRFFKNVVESDELPPDQCVPEVAHFIIRQHFEAPSMWAIFPLQDLLALKGEYRTRPATEETINDPTNPKHYWRYRVHVTLESLIKDKELQTIIKDLVRWGGRSLPQEDLEIEGSIASKLSVSEAVSEKQKIASNGEKPRVVK* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1342 964 SMART CBM_20_2 159 253 IPR002044 GO:2001070
Apr4g1342 964 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Apr4g1342 964 Coils Coil 342 369 - -
Apr4g1342 964 SUPERFAMILY (Trans)glycosidases 265 918 IPR017853 -
Apr4g1342 964 Gene3D Glycosidases 265 597 - -
Apr4g1342 964 Pfam 4-alpha-glucanotransferase 272 900 IPR003385 GO:0004134|GO:0005975
Apr4g1342 964 Gene3D Glycosidases 719 924 - -
Apr4g1342 964 PANTHER - 11 925 - -
Apr4g1342 964 CDD CBM20_DPE2_repeat2 161 258 IPR034841 GO:2001070
Apr4g1342 964 Gene3D Immunoglobulins 8 119 IPR013783 -
Apr4g1342 964 Gene3D Immunoglobulins 151 256 IPR013783 -
Apr4g1342 964 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 154 267 IPR002044 GO:2001070
Apr4g1342 964 Pfam Starch binding domain 16 108 IPR002044 GO:2001070
Apr4g1342 964 Pfam Starch binding domain 161 250 IPR002044 GO:2001070
Apr4g1342 964 CDD CBM20_DPE2_repeat1 17 117 IPR034840 GO:2001070
Apr4g1342 964 SUPERFAMILY Starch-binding domain-like 14 117 IPR013784 GO:0030246
Apr4g1342 964 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Apr4g1342 964 SUPERFAMILY Starch-binding domain-like 159 247 IPR013784 GO:0030246
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1342 16 927 Glycoside Hydrolase AT2G40840 73.246 0.0 1449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1342 K00705 - gmx:100793021 1746.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1342 4 12936146 12951246 Apr4g1342 4 12936146 12951246 ECH