Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1330 ATGGCTATGGTGAATCTGGGATTGATTTCTGGCAATAAGTCGGTGAATTCAGTGAAAATAAGCTTTCGGTTACCGTATCTTACTCAATGGGGTCAGAGTTTGTTGGTGTGTGGCTCTGTACCGGTGCTTGGATCATGGAATGTGAAGAAGGGTGTGTTGCTCACTCCCTTTCATGAAGGGACTGAGCTTGTTTGGAGTGGAAGCATCACAGTGCCAAAAGGTTTCGAATGTGAGTACACCTATTATGTTGTGGATGATAAAAAGAATATTGTGAGATGGGAGATGGGGAAGAAGCACGAACTGAGGCTCCCCGAAGGTGTTCAGAGTGGCCAGGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGATGCTCTCCCTTTCAGAAGTGCTTTCAGAGATGTCATTTTCCGGCAAAGCTGGGATTCGAGCATCACGACAACTGCAGGAGTCAACTGCATCAATCTTGAACCAGAAGCGGAATCCATTCTCGTCCAATTCAAAGTTTTCTGCCCCAATATTGAGAAAGACACATCAATATACGTGATAGGTAGCAATACAAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTACGCTGGTGAATATGTCTGGCTAGCTGAATCTGTGATACAAAGGAGTGATTTTCCAATAAGATATAGATATTGTAAATATGGCAGGTCTGGGAATGCTTCTATAGAAAACGGTCCAAATCGAGAAGTCTCCATTAATGCCTCAAGAAGAGAGGCAAAATATATTTATCTTTCGGATGGCATGATACGTGAAACGCCCTGGCGTGGTGCTGGCGTAGCTATTCCTATGTTCTCTATTAGGTCAGAATCTGATCTAGGAGTTGGAGAATTTCTTGACCTTAAATTACTAGTTGACTGGGCTGTAGCATCCGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATCAGATGTGGTGGGATTCTTATCCATACAGCTCACTTTCAGTATTTGCGCTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTAAGAACATACCAGAGGAGATCAAGCAAGAGATTGAGAGCGCAAAACAACAATTAGACGGGAAGGATGTTGATTATGAAGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTCAATCAAGAGAAAGACTTGATACTTAATTCGAGTTCCTTTCAGGAGTTCTTTTCAGAGAATGAGGGTTGGTTGAAACCCTATGCTGCCTTCTGTTTCCTGCGAGACTTTTTTGAAACATCAGAACGAAGTCAATGGGGCCGTTTTGCTCATTATTCAGAAGATAAGCTAGAGAAACTTGTATCTAAGGAAAGCCTGCATTACGAGATAATTTGCTTCCACTACTATGTTCAATACCATCTACATTTACAATTGTCTGAAGCTTCAGATTACGCACGAAAGAAGGGCGTGATCCTAAAGGGAGATCTTCCCATTGGAGTTGACAGAAACAGTGTGGATACTTGGGTGTATCCAAATTTGTTCCGAATGAACACTTCTACTGGGGCTCCTCCTGATTATTTTGATAAAAATGGTCAGAATTGGGGCTTTCCTACTTATAACTGGGAAGAGATGTCAAAAGACAACTATGCTTGGTGGCGAGCTCGATTGACACAGATGGGAAAATATTTCACAGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATCTGGGAACTTCCAGATCATGCTATGACAGGTCTAGTCGGAAAGTTCCGACCATCTATTCCTCTAAGTCAGGAAGAACTTGAAAGAGAAGGAATATGGGACTTTAATCGCCTGAGCCGCCCATACATTAGGCAGGAAATTTTACAGGTTTGTAGTCTACCTTTTATGCTACAGATGAATTTACATAATGTGTCACTAATTTATCTTAAAGACGCTATCTGGTTTTTTTTTCTAATATGTCTTGGAGACGTGCTACGTTATAATATTTTTTTCTCATTCTCTTTTCAGGAAAAATTTGGATCTGCTTGGACATTTGTTGCAACAACTTTTCTGAACGAATATGAAAAGAACTGCTATGAGTTCAAGGAGGATAGCAACACAGAGAGAAAAGTTGCTTCCAAACTGAAAACTTCTACGGAAAGTTCTCTCTTGTTGGACAGTGAAGACAAAATCAGGCGCAGTCTGTTCGATCTTTTACAGAATATAGTTCTAATACAAGATCCAGAGAATCCAAAACATTTTTATCCTCGTTTCAACCTTGAAGATACCTCAAGTTTCCAGGCTTTGGATGATCATAGCAAGAATGTTCTCAAAAGATTGTATTTCGACTATTATTTCCATCGTCAAGAGAATCTTTGGAGGCAAAATGCGCTGAAGACTCTACCTGCACTTCTAAATTCATCAGAGATGCTGGCCTGCGGGGAAGATTTGGGCCTCATTCCAAATTGTGTGCATCCTGTTATGCAAGAACTCGGTTTAGTTGGATTGCGTATTCAACGGATGCCCAATGAATCTGACCTGGAATTTGGTATTCCTTCTCAGTACAGCTACATGACGGTATGTGCTCCATCATGTCATGACTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGAAGACAACGATTTTTCAAGAATGTGATGGAGTCTGATGAGTTGCCACCTGATCAATGCGTTCCAGAAGTTGCACATTTTATTATAAGGCAACATATTGAATCCCCATCGATGTGGGCGATTTTCCCTCTCCAGGACTTGCTAGCATTAAAAGAAGAATATACAGCACGCCCCGCAATAGAAGAGACAATCAACGACCCTACAAATCCGAAGCACTATTGGAGATACCGTGCGCATGTGACTCTTGAGTCATTGAATAAAGATAATGAGCTCAAAACCATCATTAAAGATCTCGTACGTTGGGGTGGAAGATCAATTCCTCCAGAGGACTCACAAGTTGAAGCAAGTCCAATCTCAACATCATCATCAGCAGATGCTGTTTCAGAAAAGCAACAGTTTGCTGGTATCAGCGAAAAGATCAGTCATCCTTCTGAATCTAATGGAGTTCCATCGAAGGGTCCTTTGGCCGTCCGTTGA 3087 0.4159 MAMVNLGLISGNKSVNSVKISFRLPYLTQWGQSLLVCGSVPVLGSWNVKKGVLLTPFHEGTELVWSGSITVPKGFECEYTYYVVDDKKNIVRWEMGKKHELRLPEGVQSGQEIEFRDLWQTGSDALPFRSAFRDVIFRQSWDSSITTTAGVNCINLEPEAESILVQFKVFCPNIEKDTSIYVIGSNTKLGQWKVENGLKLSYAGEYVWLAESVIQRSDFPIRYRYCKYGRSGNASIENGPNREVSINASRREAKYIYLSDGMIRETPWRGAGVAIPMFSIRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHQMWWDSYPYSSLSVFALHPLYLRVQALSKNIPEEIKQEIESAKQQLDGKDVDYEATMATKLSIAKKVFNQEKDLILNSSSFQEFFSENEGWLKPYAAFCFLRDFFETSERSQWGRFAHYSEDKLEKLVSKESLHYEIICFHYYVQYHLHLQLSEASDYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMGKYFTAYRIDHILGFFRIWELPDHAMTGLVGKFRPSIPLSQEELEREGIWDFNRLSRPYIRQEILQVCSLPFMLQMNLHNVSLIYLKDAIWFFFLICLGDVLRYNIFFSFSFQEKFGSAWTFVATTFLNEYEKNCYEFKEDSNTERKVASKLKTSTESSLLLDSEDKIRRSLFDLLQNIVLIQDPENPKHFYPRFNLEDTSSFQALDDHSKNVLKRLYFDYYFHRQENLWRQNALKTLPALLNSSEMLACGEDLGLIPNCVHPVMQELGLVGLRIQRMPNESDLEFGIPSQYSYMTVCAPSCHDCSTLRAWWEEDEERRQRFFKNVMESDELPPDQCVPEVAHFIIRQHIESPSMWAIFPLQDLLALKEEYTARPAIEETINDPTNPKHYWRYRAHVTLESLNKDNELKTIIKDLVRWGGRSIPPEDSQVEASPISTSSSADAVSEKQQFAGISEKISHPSESNGVPSKGPLAVR* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1330 1028 SMART CBM_20_2 162 256 IPR002044 GO:2001070
Tpr6g1330 1028 SMART CBM_20_2 17 113 IPR002044 GO:2001070
Tpr6g1330 1028 CDD CBM20_DPE2_repeat2 165 261 IPR034841 GO:2001070
Tpr6g1330 1028 MobiDBLite consensus disorder prediction 979 1028 - -
Tpr6g1330 1028 Gene3D Glycosidases 769 974 - -
Tpr6g1330 1028 MobiDBLite consensus disorder prediction 982 1018 - -
Tpr6g1330 1028 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 157 270 IPR002044 GO:2001070
Tpr6g1330 1028 Gene3D Immunoglobulins 10 121 IPR013783 -
Tpr6g1330 1028 Gene3D Immunoglobulins 155 258 IPR013783 -
Tpr6g1330 1028 SUPERFAMILY Starch-binding domain-like 17 119 IPR013784 GO:0030246
Tpr6g1330 1028 CDD CBM20_DPE2_repeat1 19 119 IPR034840 GO:2001070
Tpr6g1330 1028 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 12 121 IPR002044 GO:2001070
Tpr6g1330 1028 Gene3D Glycosidases 268 598 - -
Tpr6g1330 1028 SUPERFAMILY Starch-binding domain-like 161 250 IPR013784 GO:0030246
Tpr6g1330 1028 Pfam 4-alpha-glucanotransferase 275 950 IPR003385 GO:0004134|GO:0005975
Tpr6g1330 1028 Pfam Starch binding domain 18 110 IPR002044 GO:2001070
Tpr6g1330 1028 Pfam Starch binding domain 163 253 IPR002044 GO:2001070
Tpr6g1330 1028 SUPERFAMILY (Trans)glycosidases 268 968 IPR017853 -
Tpr6g1330 1028 PANTHER - 665 975 - -
Tpr6g1330 1028 PANTHER - 13 620 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1330 3 977 Glycoside Hydrolase AT2G40840 68.098 0.0 1421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1330 K00705 - gmx:100809128 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1330 6 14028706 14039033 Tpr6g1330 6 14028706 14039033 ECH