Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03766 ATGGTGAATCCGCGACTGTTATCTGGGAATAAGTCTGTGAATTCAGTGAAGATAACCTTTCGGTTACCTTATTTTACACAATGGGGTCAAAGCTTGCTTGTGTGTGGCTCTGTACCAGTGCTTGGATCTGGGAATGTGAAGAAAGGCTTGTTGCTCAGCCCCTGTCATCAAGGGTCTGAGCTCATCTGGAGTGGAAGCATCACAGTGCCAAGAGGGTTCCAATGCCAGTACAACTATTATGTTGTAGATGATAACAAAAATGTTCTGAGATGGGAGATGGGGAAGAAGCGGGAACTGATACTCCCTGAAAGTATTCAGAGTGGCCAGGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGACGCTCTCCCTTTCAGAAGTGCTTTCAGAGATGTCATTTTTCGGCAAAGCTGGGATTCAAGCATAGAGAAAACAACAGGAGTCAACCACAATAATTTTGAACCAGATGCAGAATCCATTGTCGTCCAATTCAAAATTTTCTGCCCAAATATTGAGAAAGACACATCAATATATGTGATTGGAAGCAATACAAAGTTGGGACAGTGGAAAGTTGAAAATGGACTAAAGCTCAGCTATTTTGGTGAATCTGTCTGGCTAGCTGAATGTGTGATGCAAAGGAGCGATTTTCCAATAAGATATAGATATTGCAAATATGGTAGGTCTGGGAACTCTTCTATAGAAAATGGTCCAAATCGTGAAGTCTCCATTAACTCCTCAAGAAATGAGGCGAAATATATTTTCCTTTCAGATGGCATGATGCGGGAAACACCTTGGCGTGGTGCTGGCGTAGCAATTCCTATGTTCTCTGTTAGGTCGGAATCTGATCTAGGAGTTGGAGAGTTTCTTGACCTTAAATTACTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCGTACAGTTCACTCTCAGTATTTGCGTTACATCCATTGTACCTGAGAGTACAGGCACTTTCTGAGAACCTACCAGAAGAGATCAAGCAAGAGATTGAGAGGGCAAAACAGCAATTGGATGGGAAGGATGTTGATTACGAAGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTCACTCGAGAGAAAGATTTGATACTTAATTCGAGTTCCTTCCAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCATATGCTGCGTTCTGTTTCTTGCGGGACTTTTTTGAAACATCAGAACGCAGTCAATGGGGTCGTTTTGCTCATTATTCAGAAGATAAGCTAGAGAAACTTGTATCCAAGGAAAGTCTGCATTATGAGATAATTTGCTTTCACTACTATGTTCAATACCATCTACATCTACAGTTATCAGAAGCTGCAGAATACGCAAGAAAGAAGGGAGTGATTCTAAAGGGAGATCTTCCTATTGGAGTTGACAGAAACAGTGTGGATACCTGGGTTTATCCAAATTTGTTCCGCATGAATACTTCTACTGGGGCACCTCCTGATTATTTTGATAAAAATGGCCAGAATTGGGGCTTTCCTACTTATAATTGGGAAGAAATGTCAAAAGACAACTATGCTTGGTGGCGAGCTCGATTGACGCAGATGGGAAAATATTTTACAGCTTATAGAATTGATCACATATTGGGATTCTTCCGAATCTGGGAACTTCCAGATCATGCTGTGACAGGTCTAGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCAGGAAGAACTTGAAAAAGAAGGAATATGGGACTTTAATCGCCTGAGTCGCCCATATATTAGGCAGGAAATATTACAGGAAAAATTTGGACCCTCTTGGACATTTGTTGTAACGACTTTTCTGAATGAATATGACAAGAACTGCTATGAGTTCAAGGAGGATTGCAACACAGAGAAAAAAATTGCTTCCAAACTCAAAACTTGTGCAGAAAGTTCCCTCTTGTTGGAGAATGAAGACAAAGTCCGCCGCAGTCTGTTTGATCTTTTACAGAATATAGTTCTAATCCGAGATCCAGAGGATCCAAGAAAATTTTATCCTCGTTTCAACCTCGAAGATACCTCAAGTTTCCAGGCTTTGGATGATCAGAGCAAGAATGTTCTCAAAAGATTATACTATGACTATTATTTCCAACGTCAAGAGAATCTTTGGATGCAAAATGCATTGAAGACCTTGCCTGTACTTCTAAACTCATCAGACATGCTGGCCTGTGGGGAAGATCTTGGCCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCAAATGAACCTGATCTGGAGTTTGGTATTCCATCTCAATACAGCTACATGACGGTATGTGCTCCATCATGTCATGACTGTTCTACCTTGCGTGCTTGGTGGGAAGAAGATGAGGAAAGAAGACAACGATTTTTCAAGAATGTGGTTGAATCTGATGAGTTGCCACCCGATCGATGTGTTCCAGAAGTTGCACATTTTATTATAAAGCAACATTTTGAAGCCCCATCAATGTGGGCAATTTTCCCTCTTCAGGTATTCTAA 2607 0.4131 MVNPRLLSGNKSVNSVKITFRLPYFTQWGQSLLVCGSVPVLGSGNVKKGLLLSPCHQGSELIWSGSITVPRGFQCQYNYYVVDDNKNVLRWEMGKKRELILPESIQSGQEIEFRDLWQTGSDALPFRSAFRDVIFRQSWDSSIEKTTGVNHNNFEPDAESIVVQFKIFCPNIEKDTSIYVIGSNTKLGQWKVENGLKLSYFGESVWLAECVMQRSDFPIRYRYCKYGRSGNSSIENGPNREVSINSSRNEAKYIFLSDGMMRETPWRGAGVAIPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSENLPEEIKQEIERAKQQLDGKDVDYEATMATKLSIAKKVFTREKDLILNSSSFQEFFSENEGWLKPYAAFCFLRDFFETSERSQWGRFAHYSEDKLEKLVSKESLHYEIICFHYYVQYHLHLQLSEAAEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMGKYFTAYRIDHILGFFRIWELPDHAVTGLVGKFRPSIPLSQEELEKEGIWDFNRLSRPYIRQEILQEKFGPSWTFVVTTFLNEYDKNCYEFKEDCNTEKKIASKLKTCAESSLLLENEDKVRRSLFDLLQNIVLIRDPEDPRKFYPRFNLEDTSSFQALDDQSKNVLKRLYYDYYFQRQENLWMQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPDLEFGIPSQYSYMTVCAPSCHDCSTLRAWWEEDEERRQRFFKNVVESDELPPDRCVPEVAHFIIKQHFEAPSMWAIFPLQVF. 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03766 868 Gene3D Glycosidases 722 867 - -
Seca2g03766 868 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Seca2g03766 868 SUPERFAMILY Starch-binding domain-like 14 115 IPR013784 GO:0030246
Seca2g03766 868 PANTHER - 13 866 - -
Seca2g03766 868 Pfam 4-alpha-glucanotransferase 273 866 IPR003385 GO:0004134|GO:0005975
Seca2g03766 868 Gene3D Immunoglobulins 8 119 IPR013783 -
Seca2g03766 868 Gene3D Immunoglobulins 154 257 IPR013783 -
Seca2g03766 868 SUPERFAMILY (Trans)glycosidases 266 866 IPR017853 -
Seca2g03766 868 SUPERFAMILY Starch-binding domain-like 160 248 IPR013784 GO:0030246
Seca2g03766 868 CDD CBM20_DPE2_repeat2 162 259 IPR034841 GO:2001070
Seca2g03766 868 Pfam Starch binding domain 162 251 IPR002044 GO:2001070
Seca2g03766 868 Pfam Starch binding domain 16 108 IPR002044 GO:2001070
Seca2g03766 868 SMART CBM_20_2 160 254 IPR002044 GO:2001070
Seca2g03766 868 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Seca2g03766 868 CDD CBM20_DPE2_repeat1 17 117 IPR034840 GO:2001070
Seca2g03766 868 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 155 268 IPR002044 GO:2001070
Seca2g03766 868 Gene3D Glycosidases 266 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03766 Seca-Chr2 116282427 116293584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03766 16 866 Glycoside Hydrolase AT2G40840 75.088 0.0 1378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03766 K00705 - gmx:100793021 1628.99