Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1221 ATGGTGAATCCAGGATTGTTTTCTGGGAATAAGTCCGTGAATTCGGTGAAAGTAAGCTTTCGGATTCCGTATTTTACACAATGGGGTCAAAGCTTGCTGGTGTGTGGCTCTGTACCCGTGCTTGGTGCCTGGAATGTGAAGAGGGGTGTGTTGCTCAGTGTAATTCATCAAGGGAGTGAGCTCATCTGGGGTGGAAGCACCACAGTGCCAAGAGGGTTCCAATGCCAGTACAGCTATTATGTTGTAGATGATAAGAAAAATGTACTAAGATGGGAGACGGGGAAGAAGCGCGAACTGATAATCCCTGAAGGGGTTCAGAGTGGACAGGAGATCGTGTTCCGTGATCTTTGGCAGGCTGCCTCAGATGCCCTTCCTTTCAGAAGTGCTTTCAAAGATGTTATTTTTCGGGAAAGCTGGGATTTGAGCGACACAACTGCAGGAGTCAACCACATTAATTTTGAACCAGAAAGAGAAGCTGTCCTGGTCCAATTCAAAATTTCCTGCCCTAATGTTGAGAAAGACTCATCAATATATGTCATTGGTAGCAACACAAAGTTGGGTCAGTGGAAAGCTGAAAAGGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCATTAAGATATAGATATGGAAAATATGATAGGAATGGGAAATTTTCTATAGAGACTGGTTCAAACCGAGAAGTTTCTACCAACTCCTCAACGAATGATGTGAAATATATTTTTCTCTCAGATGGCATGCTGCGGGAAACACCTTGGCGTGGTGCTGGCGTAGCTATCCCTATGTTTTCTGTCAGGTCGGAATCTGATCTGGGTGTTGGAGAGTTTCTTGACCTGAAGTTGCTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCTATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGGTATGGAAGCTTCAAAATCATTGTAGAGATCAGATAA 1017 0.4356 MVNPGLFSGNKSVNSVKVSFRIPYFTQWGQSLLVCGSVPVLGAWNVKRGVLLSVIHQGSELIWGGSTTVPRGFQCQYSYYVVDDKKNVLRWETGKKRELIIPEGVQSGQEIVFRDLWQAASDALPFRSAFKDVIFRESWDLSDTTAGVNHINFEPEREAVLVQFKISCPNVEKDSSIYVIGSNTKLGQWKAEKGLKLSYFGESVWKAECVMQRSDFPLRYRYGKYDRNGKFSIETGSNREVSTNSSTNDVKYIFLSDGMLRETPWRGAGVAIPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYRYGSFKIIVEIR* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1221 338 Pfam 4-alpha-glucanotransferase 272 330 IPR003385 GO:0004134|GO:0005975
Pvu1g1221 338 Gene3D Glycosidases 264 334 - -
Pvu1g1221 338 SUPERFAMILY Starch-binding domain-like 14 117 IPR013784 GO:0030246
Pvu1g1221 338 SMART CBM_20_2 159 253 IPR002044 GO:2001070
Pvu1g1221 338 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Pvu1g1221 338 Pfam Starch binding domain 16 108 IPR002044 GO:2001070
Pvu1g1221 338 Pfam Starch binding domain 160 249 IPR002044 GO:2001070
Pvu1g1221 338 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Pvu1g1221 338 Gene3D Immunoglobulins 153 254 IPR013783 -
Pvu1g1221 338 Gene3D Immunoglobulins 8 119 IPR013783 -
Pvu1g1221 338 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 154 267 IPR002044 GO:2001070
Pvu1g1221 338 SUPERFAMILY Starch-binding domain-like 159 247 IPR013784 GO:0030246
Pvu1g1221 338 CDD CBM20_DPE2_repeat2 162 258 IPR034841 GO:2001070
Pvu1g1221 338 SUPERFAMILY (Trans)glycosidases 265 330 IPR017853 -
Pvu1g1221 338 PANTHER - 11 327 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1221 16 326 Glycoside Hydrolase AT2G40840 57.235 7.24e-127 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1221 K00705 - pvu:PHAVU_001G117500g 685.641