Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03543 ATGGTGAATCCAGGATTGTTTTCTGGGAATAAGTCCGTGAATTCGGTGAAAGTAAGCTTTCGGATACCGTATTTTACCCAATGGGGTCAGAGCTTGCTGGTTTGTGGCTCTGTACCGGTGCTTGGTGCCTGGAATGTGAAAAGGGGTGTGTTGCTCAGTGTTATTCATCAGGGGAGTGAGCTCATCTGGGGTGGAAGCATCACAGTGCCAAGAGGGTTCCAATGCCAGTACAGCTATTATGTTGTAGATGATAAGAAAAATGTACTGAGATGGGAGATGGGGAAGAAGCGCGAACTGATACTCCCTGAAGGTGTTCAGAGTGGACAGGAGATCGAGTTCCGTGATCTTTGGCAGGCTGGCTCAGATGCCCTCCCTTTCAGAAGTGCTTTCAAAGATGTCATTTTTCGGCAAAGCTGGGATTTGAGCCATGCGACAGGAGGAGTCAACCACATCAATTTTGAACCGAAAGGAGAAGCTATCTTGGTCCAGTTCAAAATTTCCTGCCCAAATGTAGAGAAAAACTCATCAATATATGTCATTGGTAGCAATACAAAGTTGGGACAGTGGAAAGCTGAAAATGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAGCTGAATGTCTGATGCACAGGATAATGTCCACATATAGATATGGAAAATATGACAGGAGTGGGAACTTCTCTATAGAAAGTGGTTCAAACCGCGAAGTTTCTACTAACTCCTCAAAGAATGAGGTGAAATATATTATTCTGTCAGATGGCATGATGCGGGAAACACCTTGGCGTGGTGCTGGCGTAGCTATACCCATGTTTTCTGTTAGGTCGGAATCTGATCTGGGTGTTGGAGAGTTTCTTGACCTTAAGTTACTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGAGCACTCACTGCAGTTAAAGCAGCCCATGCTGTTTCTTTCTTCTACCAAAGAGGGGTACCAGGGATCAGACACTTGAGATGGAGATCTGTAGTTACTTTGGAACCTCCTCCCAATCCTGAACTAATTCTTGTTCTTGAAGTCACAGTGCCTACCTCGTATTCTCAGGCTAAAGATATTGAAAAGGCAAAGCAGCAATTAGATGGGAAGGATGTTGATTATGAAGCTACAATGGCTACAAAACTCTCAATTGCTAAGAAAGTTTTCTCTCAAGAGAAAGATTTGATTCTCAATTCAAGTTCCTTCCAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAGCCCTATGCTGCTTTCTGTTTCCTGCGGGACTTCTTTGAAACATCAGATCGCAGTCAATGGGGTCGTTATGCTCATTATTCCGAAGATAAGCTAGAGAAGCTTGTATCCAAGGACAGCCTGCACTATGAGATAATTTGCTTCCACTACTATTTATCAGAAGCTGCAGAGTATGCAAGAAAGAAGGGAGTGATATTAAAGGGGGACCTTCCTATTGGAGTTGACAGAAACAGTGTGGACACCTGGGTTTATCCAAATTTGTTCCGAATGAACACTTCTACTGGGGCACCTCCAGATTATTTTGATAAAAATGGCCAAAATTGGGGTTTCCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGCGAGCTCGATTGACACAGATGGCAAAATATTTTACGGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATATGGGAACTTCCCGATCATGCTATGACAGGTCTAGTTGGAAAATTCCGACCATCTATACCTCTTAGTCAGGAAGAACTTGAAAGAGAAGGAATATGGGACTTTAATCGCTTAAGTCGCCCATATATCAAGAGGGAACTGTTACAGGAAAAATTTGGAGCTGCTTGGACTTTTGTTGCAACAACTTTTCTAAATGAAATAGACAAGAACTTCTATGAGTTCAAGGAGGATAGCAACACAGAGAAAAAAATTGCTTCCAAACTGAAAGCTTGTGCAGAAAGTTCTCTCTTGTTGGAGAGTGAAGACAAATTGCGACGCAGTCTCTTTGATCTTTCACAGAACATAGTTTTAATCCGAGATCCAGAGTATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCTCAAGTTTCCAGGATTTGGATGATCATAGGTACCTTAATAATCACTGTGACTTGTGCGTGCTGTCCATTGAGGATGGTTCCTACAATTATGCCACTTTTAAGCCTAGTTCTATGCCGAAAACTGTTCTGCATTCCAAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTGGCCTGTGGTGAAGATTTGGGCCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGAATGCCCAATGAACCTGATGTGGAATTTGGTATTCCTTCTCAGTATAGCTACATGACGGTATGTGCCCCTTCATGTCACGATTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGACGAAGATAGAAGACTTCGGTTTTTCAAGAATGTGATGGAGTCCGATGAGTTGCCGGCCGATCAATGTGTTCCAGAAGTTGCACATTTTATCATAAGGCAACATTTTGAAGCCCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGTTAGCATTAAAAGAAGAATATACAACACGCCCTGCAGCAGAGGAGACAATCAATGACCCTACAAATCCGAAGCACTATTGGAGATACCGTGTGCATGTGACTTTGGAATCATTGATTAAAGATATTGAGCTCCAAACCAGCATCAAAGATCTTGTACGTTGGAGTGGAAGGTCACTCCCTAAGGAACACTCAGAAATAGATGCCAGCTTAGTGGCAGCACTATCAGTAGCAGAAGCTGTTTCAGTGTCGTCAGTAGCAGAAGCTGTTTCAGTGTTAGCAGAAGCTATTTCTGATAAGCAGAAGTTTGCCAGTAGCCCGGAAAAGGGTGTTCTTAGGTTGCATTTGGTTATTAGGGATTCAAGAAAAAAATGTGCAGAGTTAGCCTGCTTTTCTGCTAATTTGGTATCCAGAGTTTTAGCGATGTGTCCAGCATTTGAAAAATTTCCTCTACGCTAG 3174 0.4269 MVNPGLFSGNKSVNSVKVSFRIPYFTQWGQSLLVCGSVPVLGAWNVKRGVLLSVIHQGSELIWGGSITVPRGFQCQYSYYVVDDKKNVLRWEMGKKRELILPEGVQSGQEIEFRDLWQAGSDALPFRSAFKDVIFRQSWDLSHATGGVNHINFEPKGEAILVQFKISCPNVEKNSSIYVIGSNTKLGQWKAENGLKLSYFGESVWKAECLMHRIMSTYRYGKYDRSGNFSIESGSNREVSTNSSKNEVKYIILSDGMMRETPWRGAGVAIPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYRALTAVKAAHAVSFFYQRGVPGIRHLRWRSVVTLEPPPNPELILVLEVTVPTSYSQAKDIEKAKQQLDGKDVDYEATMATKLSIAKKVFSQEKDLILNSSSFQEFFSENEGWLKPYAAFCFLRDFFETSDRSQWGRYAHYSEDKLEKLVSKDSLHYEIICFHYYLSEAAEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAMTGLVGKFRPSIPLSQEELEREGIWDFNRLSRPYIKRELLQEKFGAAWTFVATTFLNEIDKNFYEFKEDSNTEKKIASKLKACAESSLLLESEDKLRRSLFDLSQNIVLIRDPEYPRKFYPRFNLEDTSSFQDLDDHRYLNNHCDLCVLSIEDGSYNYATFKPSSMPKTVLHSKNLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPDVEFGIPSQYSYMTVCAPSCHDCSTLRAWWEEDEDRRLRFFKNVMESDELPADQCVPEVAHFIIRQHFEAPSMWAIFPLQDLLALKEEYTTRPAAEETINDPTNPKHYWRYRVHVTLESLIKDIELQTSIKDLVRWSGRSLPKEHSEIDASLVAALSVAEAVSVSSVAEAVSVLAEAISDKQKFASSPEKGVLRLHLVIRDSRKKCAELACFSANLVSRVLAMCPAFEKFPLR 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03543 1057 Gene3D Immunoglobulins 8 119 IPR013783 -
Spst1g03543 1057 Gene3D Immunoglobulins 154 254 IPR013783 -
Spst1g03543 1057 Pfam Starch binding domain 160 248 IPR002044 GO:2001070
Spst1g03543 1057 Pfam Starch binding domain 16 108 IPR002044 GO:2001070
Spst1g03543 1057 Gene3D Glycosidases 756 964 - -
Spst1g03543 1057 Pfam 4-alpha-glucanotransferase 270 939 IPR003385 GO:0004134|GO:0005975
Spst1g03543 1057 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Spst1g03543 1057 SMART CBM_20_2 159 251 IPR002044 GO:2001070
Spst1g03543 1057 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 154 265 IPR002044 GO:2001070
Spst1g03543 1057 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Spst1g03543 1057 SUPERFAMILY Starch-binding domain-like 14 117 IPR013784 GO:0030246
Spst1g03543 1057 SUPERFAMILY Starch-binding domain-like 158 245 IPR013784 GO:0030246
Spst1g03543 1057 SUPERFAMILY (Trans)glycosidases 263 957 IPR017853 -
Spst1g03543 1057 CDD CBM20_DPE2_repeat1 17 117 IPR034840 GO:2001070
Spst1g03543 1057 Gene3D Glycosidases 262 611 - -
Spst1g03543 1057 PANTHER - 13 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03543 Spst-Chr1 44626468 44643925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03543 16 973 Glycoside Hydrolase AT2G40840 65.186 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03543 K00705 - gmx:100793021 1630.92