Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03589 ATGGTGTTTCCGGGACTGGTTTCGGGGAATAAGTCTGTGAATTCGGTGAAGATAAGCTTTCGCGTACCGTATTTTACTGAATGGGGTCAGAGTTTGCTGGTGTCTGGCTCTGTACCAGTGCTTGGATCTTGGAATGTGAAGAAAGGTGTGTTGCTCACTCCCTTTCATGAAGGTTCTGAGCTTGTTTGGAGTGGAAGTATTACTGTGCCGAAAGGGTTTCAATGTGAGTATACTTATTATGTTGTGGACGATAAGAGAAATATTGTAAGATGGGAGATGGGGAAGAAACATGAAGTGAGGCTCCCTGAAAGTGTTCAGAGTGGTCAGGAGATTGAGTTTCGTGATCTTTGGCAGACAGGCTCAGATGCTCTCCCTTTCAGAAGTGCATTCCGAGATGTCATTTTTCGGCAAAGTTGGGATTCGAGCACCATCACAACCACAGGAGTCAACCACATCACTTTTGAACCAGAAGCGGAGTCCATCCTCATCCAATTCAAAGTTTCCTGCCCAACTATTGAGAAAGACACATCAATATACGTGATAGGTAGCGATACAAAGTTGGGGCAGTGGAAAGTTGAAAATGGCCTAAAACTCAGCTATGTTGGTGAATTTGTATGGCTAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCAATAAGATATAGATATTGTAAATATGACAGGTCTGGGAACGCTTCTATAGAAAACGGTCCAAATCGAGAAGTCTCAATTAACTCCTCAAGAAGAGAAGCAAAATATATTTTTCTTTCAGATGGCATGATACGAGAAACGCCCTGGCGTGGTGCTGGCGTAGCAATTCCTATGTTCTCTATTAGGTCGGACTCTGATCTAGGAGTTGGGGAGTTTCTTGACCTTAAGTTACTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTTCATCAGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTATTTGCGCTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTGAGAACTTACCAGAGGAGATCAAGCAAGAGATTGAGAAGGCAAAACAACAATTAGATGGGAAGGATGTTGATTATGAAGCTACATTGTCTACTAAACTCTCAATTGCGAAGAAAGTTTTCAATCAAGAGAAAGATTTGATACTTAATTCGAGTTCCTTTCAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCCTATGCTGCTTTCTGTTTCCTGCGGGATTTCTTTGAGACATCGGAACGAAGTCAATGGGGCAGTTTTGCTAATTATTCTGAAGATAAGTTGGAGAAACTTGTATCCAAGGAAAGTCTGCATTACGAGATAATTCGCTTCCACTACTATGTTCAATATCATCTGCATTTACAATTGTCTGAAGCTTCAGAATACGCAAGAAAGAAGGGAGTGATTCTAAAGGGAGATCTTCCCATCGGAGTTGACAGAAACAGTGTGGATACTTGGGTTTATCCAAATTTGTTTCGAATGAACACTTCTACCGGGGCACCTCCTGACTATTTTGATAAAAATGGCCAGAATTGGGGCTTTCCTACTTATAATTGGGAAGAGATGTCAAAAGACAACTATGGTTGGTGGCGAGCTCGATTGACACAGATGGGAAAATATTTCACAGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATCTGGGAACTTCCAGAACATGCCGTGACAGGTCTAGTCGGAAAATTCCGACCATCTATTCCTCTAAGTCAGGAAGAACTTGAAAGAGAAGGGATATGGGACTTTAATCGCCTGAGCCGTCCATACATTAGACAGGAAATATTACAGGAAAAATTTGGATCTGCTTGGACATTTGTTGCAACAACTTTTCTGAACGAATATGAAAAGAACTGCTATGAGTTCAAGGAGGATAGCAACACAGAGAAAAAAATTGTTTCCAAACTGAAAACTTCTGCAGAAAGTTCTCTGTTGTTGGAGAGTGAAGACAAAATCCGGCGTAGTCTGTTCGATCTTATACAGAATATAGCTCTTATCCGAGATCCAGAGAATCCAAAAGATTTTTATCCTCGTTTCAACCTTGAAGATACCTCAAGTTTCCAGGCTTTGGATGATCACAGCAAGAATGTTCTCAAAAGATTGTATTACGACTACTATTTCCAACGTCAAGAGAATCTTTGGAGGCAAAATGCGCTTAAGACTCTACCTGCACTTCTAAATTCATCAGAGATGCTGGCCTGCGGGGAAGATTTGGGCCTCATTCCATCTTGTGTGCATCCTGTTATGCAAGAACTCGGATTAGTTGGGCTGCGCATCCAACGGATGCCCAGTGAATCTGATCTGGAATTTGGCATTCCTTCTAAATACAGCTACATGACGGTATGTGCTCCATCATGTCATGACAGTTCCACCTTGCGTGCTTGGTGGGAAGAAGACGACGAAAGAAGGCAACGTTTTTTCAAGAATGTGATGGAGTCTGATGAGTTGCCACCTGATCAATGCGTTCCAGAAGTTGCACATTATATTATAAGGCAACATATTGAATCTCCATCGATGTGGGCAATTTTCCCTCTTCAGGACTTGTTAGCATTAAAAGAAGAATATACAACACGCCCTGCAGCAGAAGAGACAATCAACGACCCTACAAATCCGAAGCACTATTGGAGATACCGTACGCATGTGACTCTGGAGTCATTAAATAAAGATAATGAACTCCAAACCATCATTAAAGATCTTGTACGTTGGGGCGGAAGATCAATTCCTCCAGAGGAATCACAAGTTGAAGATGCTGTCTCTGAAAAGCAACAGTTTGTCGCAACCGGCGTAAAGATCCGTAATCCTTCTGAATCTAATGGAGTTTCGTTGAAGGATCCTTTGGCTGTCAGTTGA 2910 0.4192 MVFPGLVSGNKSVNSVKISFRVPYFTEWGQSLLVSGSVPVLGSWNVKKGVLLTPFHEGSELVWSGSITVPKGFQCEYTYYVVDDKRNIVRWEMGKKHEVRLPESVQSGQEIEFRDLWQTGSDALPFRSAFRDVIFRQSWDSSTITTTGVNHITFEPEAESILIQFKVSCPTIEKDTSIYVIGSDTKLGQWKVENGLKLSYVGEFVWLAECVMQRSDFPIRYRYCKYDRSGNASIENGPNREVSINSSRREAKYIFLSDGMIRETPWRGAGVAIPMFSIRSDSDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHQMWWDSYPYSSLSVFALHPLYLRVQALSENLPEEIKQEIEKAKQQLDGKDVDYEATLSTKLSIAKKVFNQEKDLILNSSSFQEFFSENEGWLKPYAAFCFLRDFFETSERSQWGSFANYSEDKLEKLVSKESLHYEIIRFHYYVQYHLHLQLSEASEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMGKYFTAYRIDHILGFFRIWELPEHAVTGLVGKFRPSIPLSQEELEREGIWDFNRLSRPYIRQEILQEKFGSAWTFVATTFLNEYEKNCYEFKEDSNTEKKIVSKLKTSAESSLLLESEDKIRRSLFDLIQNIALIRDPENPKDFYPRFNLEDTSSFQALDDHSKNVLKRLYYDYYFQRQENLWRQNALKTLPALLNSSEMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPSESDLEFGIPSKYSYMTVCAPSCHDSSTLRAWWEEDDERRQRFFKNVMESDELPPDQCVPEVAHYIIRQHIESPSMWAIFPLQDLLALKEEYTTRPAAEETINDPTNPKHYWRYRTHVTLESLNKDNELQTIIKDLVRWGGRSIPPEESQVEDAVSEKQQFVATGVKIRNPSESNGVSLKDPLAVS 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03589 969 SUPERFAMILY (Trans)glycosidases 266 919 IPR017853 -
Vivi6g03589 969 Gene3D Immunoglobulins 8 119 IPR013783 -
Vivi6g03589 969 Gene3D Immunoglobulins 153 256 IPR013783 -
Vivi6g03589 969 CDD CBM20_DPE2_repeat2 163 259 IPR034841 GO:2001070
Vivi6g03589 969 SUPERFAMILY Starch-binding domain-like 159 248 IPR013784 GO:0030246
Vivi6g03589 969 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Vivi6g03589 969 SUPERFAMILY Starch-binding domain-like 15 117 IPR013784 GO:0030246
Vivi6g03589 969 Gene3D Glycosidases 720 925 - -
Vivi6g03589 969 Pfam Starch binding domain 16 108 IPR002044 GO:2001070
Vivi6g03589 969 Pfam Starch binding domain 161 251 IPR002044 GO:2001070
Vivi6g03589 969 PANTHER - 13 926 - -
Vivi6g03589 969 Pfam 4-alpha-glucanotransferase 273 901 IPR003385 GO:0004134|GO:0005975
Vivi6g03589 969 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 155 268 IPR002044 GO:2001070
Vivi6g03589 969 Gene3D Glycosidases 266 597 - -
Vivi6g03589 969 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Vivi6g03589 969 SMART CBM_20_2 160 254 IPR002044 GO:2001070
Vivi6g03589 969 MobiDBLite consensus disorder prediction 949 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03589 Vivi-Chr6 129298299 129307833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03589 16 954 Glycoside Hydrolase AT2G40840 71.033 0.0 1450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03589 K00705 - gmx:100809128 1694.86