Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g2106 . . . . . . . Aed8g1967 Aev09g1605 . Ahy19g1912 . Aip09g02228 . . . Amo19g2348 . Apr8g1644 . Arst5g02639 . Bach1g01296 . . . . . . . . Cca02g01690 . . Dod06g1494 . . . . . Gma10g01722 Gma20g02001 Gma16g01684 . Gso10g1603 Gso10g1603 Gso10g1603 . . . . Lal1g0780 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr1g2706 . . . Phco5g00535 . . . Psa6g2581 . . . . Pte9g00250 . . Pumo6g02744 . Pvu4g1369 . Rops5g00679 . Seca10g04305 . Spst4g03034 . . Ssu7g1459 . . Tpr1g1721 . . . Tsu01g03170 . Vian8g01206 . . . Vimu8g01887 . Viun4g02394 . . . . Vra8g1702
Vvi18g2107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2110 . . . . . . . . . . . . . . . . . . . Apr6g0828 . . Bach1g01297 . . . . . . . . . . . . . . . . . . . Gma16g01690 . . . . . . . . Lal1g0778 Lal2g0802 . . . . . . . . . Lasa1g02390 . . . . . . . . . . . . . Mepo7g01027 . Mesa22g02608 . . . . . Phac4g01702 . Phco5g00524 . . . . . Pste9g01294 . . . . . Pumo6g02768 . Pvu4g1390 . Rops5g00658 . Seca10g04322 . Spst4g03026 . . . . . . . Trre11g01601 . . . Vian8g01215 . Vifa1g03899 . Vimu8g01870 . Viun4g02410 . Vivi2g05704 . . .
Vvi18g2111 . . . . . . . . . . . . . . . . . . . Apr6g0829 . . Bach1g01298 . . . . . . . . . Dere06g1528 . . . . . Glsi01g1737 . . . Gma16g01691 . . . . . . . . . Lal2g0803 . . . . . . . . . Lasa1g02391 . . . . . . . . . . . . . Mepo7g01025 . Mesa22g02610 . . . . . Phac4g01704 . Phco5g00523 . . . . . Pste9g01295 . . . . . Pumo6g02769 . Pvu4g1391 . Rops5g00657 . Seca10g04323 . Spst4g03025 . . . Sto10g2633 . . . Trre11g01602 . . . Vian8g01216 . Vifa1g03898 . Vimu8g01867 . Viun4g02412 . Vivi2g05705 . . .
Vvi18g2112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2115 . . . . Adu09g01776 . . . Aev09g1602 . Ahy19g1910 . Aip09g02225 . . . Amo19g2345 . Apr8g1643 . Arst9g02351 . . . . . . . . . . . . . Dod06g1497 . . . . . . Gma20g02002 . . . . . . . . . . . . . . . . . . Lapu7g01524 . Lasa6g02750 . . . . . . . . . . . Mal1g1170 . Mepo4g03136 . Mesa1g03389 . . . Mtr1g2710 . . . Phco6g01992 . . . Psa6g2584 . Pste4g00480 . . Pte9g00249 . . . . Pvu7g1165 . . . . . Spst10g00299 . . . Sto10g2634 . Tpr1g1719 . Trre1g03492 . Tsu01g03172 . . . . . Vimu3g02359 . . . Vivi1g06073 . . .
   
Previous Page 2672 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu09g01776 Chr09 86473640 86476272 -
Aev Aev09g1602 Chr09 19994710 19998012 +
Ahy Ahy19g1910 Chr19 110132265 110135043 +
Aip Aip09g02225 Chr09 101905454 101908198 +
Amo Amo19g2345 Chr19 107067277 107070294 +
Arst Arst9g02351 Chr9 84342698 84345552 -
Dod Dod06g1497 Chr06 20059350 20062262 -
Lapu Lapu7g01524 Chr7 30696446 30699224 +
Lasa Lasa6g02750 Chr6 516391276 516393191 -
Mepo Mepo4g03136 Chr4 40674837 40677595 -
Mesa Mesa1g03389 Chr1 57675251 57677393 -
Phco Phco6g01992 Chr6 39562866 39565370 +
Pste Pste4g00480 Chr4 3638622 3641216 -
Pte Pte9g00249 Chr9 2829132 2831906 +
Pvu Pvu7g1165 Chr7 15078791 15081638 -
Spst Spst10g00299 Chr10 3026319 3028767 +
Sto Sto10g2634 Chr10 36626644 36629701 -
Trre Trre1g03492 Chr1 31353822 31357012 -
Vimu Vimu3g02359 Chr3 38062844 38065626 +
Vivi Vivi1g06073 Chr1 135229454 135231860 +
Vvi Vvi18g2106 Chr18 29189164 29189724 -
Aed Aed8g1967 Chr8 24184402 24184977 +
Aev Aev09g1605 Chr09 20010985 20012393 +
Ahy Ahy19g1912 Chr19 110613090 110613977 +
Aip Aip09g02228 Chr09 102297628 102298588 +
Amo Amo19g2348 Chr19 107622913 107623798 +
Apr Apr8g1644 Chr8 26601932 26602887 +
Arst Arst5g02639 Chr5 80703895 80705147 -
Bach Bach1g01296 Chr1 26312902 26313501 -
Cca Cca02g01690 Chr02 35872238 35876417 +
Dod Dod06g1494 Chr06 20012032 20013025 -
Gma Gma10g01722 Chr10 44382077 44383057 +
Gma Gma20g02001 Chr20 47280672 47281253 -
Gma Gma16g01684 Chr16 37833337 37834271 -
Gso Gso10g1603 Chr10 42578915 42579993 +
Gso Gso10g1603 Chr10 42578915 42579993 +
Gso Gso10g1603 Chr10 42578915 42579993 +
Lal Lal1g0780 Chr1 5305114 5305716 +
Mtr Mtr1g2706 Chr1 38178528 38179528 +
Phco Phco5g00535 Chr5 4975358 4975915 +
Psa Psa6g2581 Chr6 193129422 193130522 +
Pte Pte9g00250 Chr9 2834708 2835458 +
Pumo Pumo6g02744 Chr6 65692576 65693134 -
Pvu Pvu4g1369 Chr4 40519471 40520031 -
Rops Rops5g00679 Chr5 12129932 12130510 +
Seca Seca10g04305 Chr10 97504350 97510874 -
Spst Spst4g03034 Chr4 69759600 69760160 +
Ssu Ssu7g1459 Chr7 31060908 31063517 -
Tpr Tpr1g1721 Chr1 16507857 16508617 +
Tsu Tsu01g03170 Chr01 39115260 39115856 -
Vian Vian8g01206 Chr8 30739242 30739802 -
Vimu Vimu8g01887 Chr8 24538557 24541322 +
Viun Viun4g02394 Chr4 39299615 39300857 -
Vra Vra8g1702 Chr8 34201651 34202565 +
Vvi Vvi18g2107 Chr18 29194471 29196480 +
Vvi Vvi18g2108 Chr18 29199470 29199682 -
Vvi Vvi18g2109 Chr18 29203050 29240498 +
Vvi Vvi18g2110 Chr18 29243610 29244818 -
Apr Apr6g0828 Chr6 12744753 12746060 -
Bach Bach1g01297 Chr1 26316312 26317529 -
Gma Gma16g01690 Chr16 37857808 37859100 -
Lal Lal1g0778 Chr1 5284710 5285984 +
Lal Lal2g0802 Chr2 5174862 5176151 -
Lasa Lasa1g02390 Chr1 271177975 271179174 -
Mepo Mepo7g01027 Chr7 15750182 15751471 +
Mesa Mesa22g02608 Chr22 69155657 69156829 +
Phac Phac4g01702 Chr4 44232821 44235841 -
Phco Phco5g00524 Chr5 4908054 4909346 +
Pste Pste9g01294 Chr9 11450761 11452225 -
Pumo Pumo6g02768 Chr6 66089967 66091791 -
Pvu Pvu4g1390 Chr4 40867870 40869162 -
Rops Rops5g00658 Chr5 11203187 11204449 +
Seca Seca10g04322 Chr10 97815266 97816462 -
Spst Spst4g03026 Chr4 69713079 69714377 +
Trre Trre11g01601 Chr11 15642771 15643946 -
Vian Vian8g01215 Chr8 30846942 30848237 -
Vifa Vifa1g03899 Chr1 600634560 600635822 +
Vimu Vimu8g01870 Chr8 24406317 24407618 +
Viun Viun4g02410 Chr4 39394582 39396779 -
Vivi Vivi2g05704 Chr2 185836213 185837693 -
Vvi Vvi18g2111 Chr18 29260238 29263470 -
Apr Apr6g0829 Chr6 12750414 12766168 -
Bach Bach1g01298 Chr1 26319633 26323105 -
Dere Dere06g1528 Chr06 28951304 28956052 -
Glsi Glsi01g1737 Chr01 79780711 79788559 -
Gma Gma16g01691 Chr16 37863239 37868774 -
Lal Lal2g0803 Chr2 5178982 5185080 -
Lasa Lasa1g02391 Chr1 271207698 271215718 -
Mepo Mepo7g01025 Chr7 15726350 15737867 +
Mesa Mesa22g02610 Chr22 69285596 69288666 -
Phac Phac4g01704 Chr4 44238811 44244882 -
Phco Phco5g00523 Chr5 4897833 4902546 +
Pste Pste9g01295 Chr9 11457038 11461729 -
Pumo Pumo6g02769 Chr6 66096237 66102790 -
Pvu Pvu4g1391 Chr4 40873063 40879018 -
Rops Rops5g00657 Chr5 11192459 11197930 +
Seca Seca10g04323 Chr10 97829167 97833842 -
Spst Spst4g03025 Chr4 69703591 69710586 +
Sto Sto10g2633 Chr10 36620468 36623007 -
Trre Trre11g01602 Chr11 15655246 15660111 -
Vian Vian8g01216 Chr8 30853624 30858318 -
Vifa Vifa1g03898 Chr1 600361374 600365088 +
Vimu Vimu8g01867 Chr8 24393393 24393950 +
Viun Viun4g02412 Chr4 39400509 39405829 -
Vivi Vivi2g05705 Chr2 185846435 185851323 -
Vvi Vvi18g2112 Chr18 29279237 29285634 -
Vvi Vvi18g2113 Chr18 29290057 29290738 -
Vvi Vvi18g2114 Chr18 29309236 29310270 -
Vvi Vvi18g2115 Chr18 29311326 29315306 -
Adu Adu09g01776 Chr09 86473640 86476272 -
Aev Aev09g1602 Chr09 19994710 19998012 +
Ahy Ahy19g1910 Chr19 110132265 110135043 +
Aip Aip09g02225 Chr09 101905454 101908198 +
Amo Amo19g2345 Chr19 107067277 107070294 +
Apr Apr8g1643 Chr8 26598503 26601216 +
Arst Arst9g02351 Chr9 84342698 84345552 -
Dod Dod06g1497 Chr06 20059350 20062262 -
Gma Gma20g02002 Chr20 47282852 47285406 -
Lapu Lapu7g01524 Chr7 30696446 30699224 +
Lasa Lasa6g02750 Chr6 516391276 516393191 -
Mal Mal1g1170 Chr1 14636167 14638273 -
Mepo Mepo4g03136 Chr4 40674837 40677595 -
Mesa Mesa1g03389 Chr1 57675251 57677393 -
Mtr Mtr1g2710 Chr1 38192048 38194864 -
Phco Phco6g01992 Chr6 39562866 39565370 +
Psa Psa6g2584 Chr6 193491100 193493374 -
Pste Pste4g00480 Chr4 3638622 3641216 -
Pte Pte9g00249 Chr9 2829132 2831906 +
Pvu Pvu7g1165 Chr7 15078791 15081638 -
Spst Spst10g00299 Chr10 3026319 3028767 +
Sto Sto10g2634 Chr10 36626644 36629701 -
Tpr Tpr1g1719 Chr1 16496647 16500393 +
Trre Trre1g03492 Chr1 31353822 31357012 -
Tsu Tsu01g03172 Chr01 39134376 39137790 -
Vimu Vimu3g02359 Chr3 38062844 38065626 +
Vivi Vivi1g06073 Chr1 135229454 135231860 +