Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03899 ATGGTTATAATAGAAATACAAACCAAACTTCGTGTAGCTCTTGGCACAATGAAAGACCAAGCTTCAATAGGCAAAGCCATGATGTATAACCAACAACAACATGATGGTTTTTCCAACATAGAGATTGCAATTATTCGTGCAACAAGTCATGGCAATAACACAATTGATGACAAATACATGCATGAAATCCTTTTTCATGTATCAAACTCAAAAGGGTCAATCCCTTTTCTCGCGGAGAGAATTTCGCGCCGTCTATGCAAAACCAAAGACAATCTTGTTGCTCTTAAGACCCTTGTTTTGATTCATAGACTTCTTAGAGGTGGAAACCGAAAATTCGAACAAGAGTTATGCAAAGCTCATGTATCTGGTCATTTGCAAATCACCATAATGAGGTATTTTTGTGTTGCAAAGTATTTTTATGACCCTTTAGTTTGTTTTTTACACAAGTATGCATCTTATCTAGAAGAAAGAATGAGTTGGCTCATAAACCAAGGTGGAAAACTTGAACCTATTATGTCTAAAGGGTTAGAATTTAGAAGATATGGTGAGAAATCTTTTGATATGGCATTTAGAATATTGCCTAAATGTCAAATTCTTATTGATAAGGTTTTGGAATTTTCACCATGTGATATTTTGAGGTCAAATCATCATCATAATCATCATAGTTTTACTCATGTTGCTATGAGCAATATTTTGAGAGAAAGTTTTCAAGTTTACATGACATTTTCTGAAGGCATTGAAGCTCTTGTTAACATGATCTTTGAGTTAGAATCATCAGCCAAATCCTTAGCTTGTGAAATACTCAACAAAGGTTCTATTCAAAGTCAAAAGCTTCATGATTTGTATCAAACTTGTAAAAAATTGATTGAAAACAAGAATTTGGAATACCCTTTTGTTCAAATTATAAGTATGAATCATATAATGGAATTAGATAAATTTAGTTGTCAACAAAATCAAGTTGAAGGTTCAAATGTCTCTCTATCAAGTATATCAAGTATCTCAAAGTTTCCTCCAATTTCAAGCCTTTTCAATAGTTCAAAGGAGATAGAGTTGGAAGTAACTTCAAAAGAAAGAAAGAAAGATGAAGAGAAGGCTGATTTAAATTTTCCAACAATTCCAACTCTTTTTTCATGGACACTAGAAACTAAAATAAGCAAAGTTTGGGTGGTGTTTGAAGATGAAGTTTCTAGTGAATCACATATTCTTCCAACACAAGAAAATCTTGGAGATGTTAATTATGCAACCATGTCCTCAAAGGTATGA 1263 0.3278 MVIIEIQTKLRVALGTMKDQASIGKAMMYNQQQHDGFSNIEIAIIRATSHGNNTIDDKYMHEILFHVSNSKGSIPFLAERISRRLCKTKDNLVALKTLVLIHRLLRGGNRKFEQELCKAHVSGHLQITIMRYFCVAKYFYDPLVCFLHKYASYLEERMSWLINQGGKLEPIMSKGLEFRRYGEKSFDMAFRILPKCQILIDKVLEFSPCDILRSNHHHNHHSFTHVAMSNILRESFQVYMTFSEGIEALVNMIFELESSAKSLACEILNKGSIQSQKLHDLYQTCKKLIENKNLEYPFVQIISMNHIMELDKFSCQQNQVEGSNVSLSSISSISKFPPISSLFNSSKEIELEVTSKERKKDEEKADLNFPTIPTLFSWTLETKISKVWVVFEDEVSSESHILPTQENLGDVNYATMSSKV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03899 420 PANTHER CLATHRIN ASSEMBLY PROTEIN 11 365 IPR045192 GO:0048268|GO:0072583
Vifa1g03899 420 Gene3D ANTH domain 177 328 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vifa1g03899 420 ProSiteProfiles ENTH domain profile. 32 168 IPR013809 -
Vifa1g03899 420 SUPERFAMILY GAT-like domain 180 313 - -
Vifa1g03899 420 CDD ANTH_N_AP180_plant 40 160 - -
Vifa1g03899 420 Coils Coil 346 366 - -
Vifa1g03899 420 Gene3D - 8 161 IPR008942 -
Vifa1g03899 420 SMART enth_2 38 170 IPR013809 -
Vifa1g03899 420 Pfam ANTH domain 40 314 IPR011417 GO:0005543
Vifa1g03899 420 SUPERFAMILY ENTH/VHS domain 39 159 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03899 Vifa-Chr1 600634560 600635822 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03899 - - tpra:123911526 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03899 1 600634560 600635822 Vifa1g03899 1 600634560 600635822 ECH