Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03026 ATGGGTGTTGACATACAAGGTAAGCTTCGTTTAGCTCTTGGCTCAGTGAAAGATCATGCCTCTATTGGCAAGGCCATGATGTATCATTACCAACATGATGGCTTTTCCAACATAGAGATTGCAGTCCTGCGTGCTACTGGCCATGATAATGGAACCATTGACGACAGATACATGCATGAAATCCTCTTTCTTGTGTCAAACTCTCCAGGATCCATTCCTTTTCTGGGTGAAAGGATTTCACGCCGCCTAGGCAAAACTAAGGACCATGTTGTGGCCCTCAAGACCCTTGTCTTGATTCATCGCCTTCTTAGAGGGGGAAACAGGTCCTTTGAACAAGAGCTATGCAAGGCACATGTCTCAGGTCACCTACAAATTAGTACAAGGTGTTTCATAAAGAGTTCTGATCACCCTTCAGTTGGTTTCCTACACAAATATGCAGCTTATCTTGAAGAGAGGATGAGTTGGCTCATCAACCAAGCAGGGAAACTTGAGCCAGTTATGTCCAAAGGGTTAGAATTTAGGCGCTATGATGAGAAATCCTTTGATATGGCATTCAGAACATTGCCTAAATGCCAACTGCTTATTGATAAGGTGTTGGAATGGTCACCAAATGATATTTTGTGCTCAGATCATAGCCTGGCTCAAGCTGCTATGAGCAACACCTTGAGAGAGAGCTTCCAGGTTTATATGACATTTTCTGAAGGCATTGCAGCTCTTGTGAACATGTTTTTTGATCTAACAGCATCAGCCAGAGGCCTAGCCTGTGAAATACTTAAGAAAGCTTCTCTCCAGAGCCAAAAGCTTCATGATCTATATGAAAGTTGCAAACAAGTGGTTGAAAACAAGAATTTGGATTACCCTTCTGTTCAAATAATCAGCATGAGTCATGTAGTAGCATTGGAACAACTTGGTAGTCCACAAAATGAACTTGCAACTTCACATGTCTCTCTATCTAGCATCTCAAGGCCACCTCCAATTTTAAGCCACTTAACAAAATCAAAAGAGATAGAGTTGGAAGTGGCATCAGAAGAAAACATAAGGAATGAAGAGAAGAAAGTTGATGTAAACTTGTCACCAACCCCAACTCTTTTTTCATTGACACTAGAAACTAAAATAAGCATGGTGTGGGTGGTGTTTGAAGATGAGGTTCCCAATGAATCACAGGTTCTTCCATCAGCACAGCAAAAACTTGGAACTGTTGATGCTGTAACTGACATAAAAAGTGAATATGGCGGGCCTAGTGTGTTCCTTAATCCATTTCCATCTACTTTTCGAACAAGCGTGTCTTCAAAGGTATAA 1299 0.4149 MGVDIQGKLRLALGSVKDHASIGKAMMYHYQHDGFSNIEIAVLRATGHDNGTIDDRYMHEILFLVSNSPGSIPFLGERISRRLGKTKDHVVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQISTRCFIKSSDHPSVGFLHKYAAYLEERMSWLINQAGKLEPVMSKGLEFRRYDEKSFDMAFRTLPKCQLLIDKVLEWSPNDILCSDHSLAQAAMSNTLRESFQVYMTFSEGIAALVNMFFDLTASARGLACEILKKASLQSQKLHDLYESCKQVVENKNLDYPSVQIISMSHVVALEQLGSPQNELATSHVSLSSISRPPPILSHLTKSKEIELEVASEENIRNEEKKVDVNLSPTPTLFSLTLETKISMVWVVFEDEVPNESQVLPSAQQKLGTVDAVTDIKSEYGGPSVFLNPFPSTFRTSVSSKV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03026 432 FunFam putative clathrin assembly protein At1g33340 13 157 - -
Spst4g03026 432 Pfam ANTH domain 38 302 IPR011417 GO:0005543
Spst4g03026 432 SMART enth_2 36 165 IPR013809 -
Spst4g03026 432 Gene3D - 8 157 IPR008942 -
Spst4g03026 432 CDD ANTH_N_AP180_plant 38 155 - -
Spst4g03026 432 Gene3D ANTH domain 169 317 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Spst4g03026 432 FunFam Putative clathrin assembly protein At1g33340 170 313 - -
Spst4g03026 432 SUPERFAMILY GAT-like domain 175 302 - -
Spst4g03026 432 SUPERFAMILY ENTH/VHS domain 37 154 IPR008942 -
Spst4g03026 432 ProSiteProfiles ENTH domain profile. 30 163 IPR013809 -
Spst4g03026 432 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 366 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03026 Spst-Chr4 69713079 69714377 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03026 - - gmx:100808531 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03026 4 69713079 69714377 Spst4g03026 4 69713079 69714377 ECH