Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00679 ATGCAAATGAAGCAACAATCAATATACCTGGTACTAGTGTCATTGATCTTGCTTGTTCTTGCATCCCAAGCAAAAGGGTCTCGTCCTGGGATTCTATGGGCTGATTTGTTGTCTGATCGTTTCCCTGATCCATTTCATGTGTTAGAGCAAACCCCATATGGGGTTGACAAATATGAGCCATCTATGGCATTGTCACCTGCAAGAGTAGACTGGAAGGAGACGCCAAAGGGACATGTTATAATGGTGGATGTGCCAGGGTTGAAGAAAGATGAGATTAAGATAGAAGTGGAGGGGAATAGGGTGCTGAAAGTGAGTGGAGAAAGGAAGAAGGAGGAAGAGGAGAAAGGGGATCATTGGCATAGAGTGGAGAGATCCTATGGCAAATTTTTGAGGCAGTTCAGGATGCCAGATGATGTGGACTTGGATTCTGTCAAGGCCAAATTGGAGAATGGAGTGCTTACTCTGACATTGAACAAGCTATCATCTGATAAGATCAAAGGTCCAAGGGTGGTGAGCATTGATGGGAATGATGAGCAACCAACCCTGCTCAAGGGTAATGAGACCAAGTCAGAGCTTTGA 579 0.4491 MQMKQQSIYLVLVSLILLVLASQAKGSRPGILWADLLSDRFPDPFHVLEQTPYGVDKYEPSMALSPARVDWKETPKGHVIMVDVPGLKKDEIKIEVEGNRVLKVSGERKKEEEEKGDHWHRVERSYGKFLRQFRMPDDVDLDSVKAKLENGVLTLTLNKLSSDKIKGPRVVSIDGNDEQPTLLKGNETKSEL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00679 192 CDD ACD_ScHsp26_like 68 159 - -
Rops5g00679 192 FunFam 22.0 kDa heat shock protein 30 173 - -
Rops5g00679 192 SUPERFAMILY HSP20-like chaperones 59 169 IPR008978 -
Rops5g00679 192 Gene3D - 32 174 IPR008978 -
Rops5g00679 192 Pfam Hsp20/alpha crystallin family 70 173 IPR002068 -
Rops5g00679 192 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 58 176 IPR002068 -
Rops5g00679 192 MobiDBLite consensus disorder prediction 171 192 - -
Rops5g00679 192 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 57 165 IPR031107 -
Rops5g00679 192 ProSiteProfiles CS domain profile. 64 171 IPR007052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00679 Rops-Chr5 12129932 12130510 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00679 K13993 - gmx:547971 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00679 5 12129932 12130510 Rops5g00679 5 12129932 12130510 ECH
Rops5g00679 5 12129932 12130510 Rops6g01586 6 32789471 32792058 PCT