Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02410 ATGGGTGTGGACATACAAGGTAAGCTTCGTTTAGCTCTTGGCTCAGTGAAAGATCATGCCTCTATTGGCAAGGCCATGATGTATCATTACCAACATGATGGCTTTTCCAACATAGAGATTGCAGTGCTGCGTGCCACTGGCCATGATAATGGCACCATTGGTGACAGATACATGCATGAAATCCTCTTTCTTGTGTCAAACTCTCCAGGGTCCATTCCTTTTCTGGCTGAAAGGATTTCACGTCGCTTAGGAAAAACTAAGGATCATGTTGTGGCCCTCAAGACCCTTGTCTTGATTCATCGCCTTCTTAGAGGGGGAAACAGGTCCTTTGAACAAGAGTTATGCAAAGCACATGTCTCAGGTCATTTACAGATTAATACAAGGTGTTTCACAAAGAGTTCTGATCACCCTTCAGCTGGTTTTCTTCACAAATATGCAGCTTATCTTGAAGAGAGGATGAGTTGGCTCATCAACCAAGCAGGGAAACTTGAACCAGTCATGTCCAAAGGGTTAGAGTTTAGGCGCTATGATGAGAAATCCTTTGATATGGCATTCAGAACATTGCCTAAATGCCAAGTGCTTCTTGATAAGGTGTTGGAGTGTTCACCACATGATATTTTGTGCTCAGATCATGGCTTGGCTCAAGCTGCTATGAGCAACACTTTGAGAGAAAGTTTCCAAGTTTACATGACATTTTCTGAAGGCATTGCAGCTCTTGTGAACATGTTCTTTGATCTAACAGCATCAGCCAGAGTCCTAGCCTGTGAAATACTCAAGACAGCTTCTCTCCAGACCCAGAAGCTTCATGATCTGTATGAAAGTTGCAAATTTGTGGTTGAAAACAAGAATTTGGATTACCCTTCTGTTCAAATAATCAGTATGAGTCATGTAGTGGCACTGGAACAACTTGGTACTCAACAAAATGAACTTGCAACTTCACATGTCTCTCTTTCTAGCATCTCAAGGCCTCCTCCAAAATCAAAAGAGATGGTAGAGTTGGAAGTGGCAGCAGAAGAAAACAGAAGGAGTGAAGAGAAAATTGATGTAAACCTGTCACCAACACCAACACCAACTCTTTTTTCATGGACACTAGAGACTAAAATAAGCATGGTGTGGGTGGTGTTTGAAGATGAAGTTCCCAATGAATCACAGGTTCTTCCAGCACAGCAAAAGCTTGGAACTGTTGATGCTGTTACTGATATGAAAAGTGAATATGGTAGGCCTAGTGTGTTCCTGAATTCATTCTCATCTACTTTTCAAACAAGCATGTCTTCAAAGGTATGA 1284 0.419 MGVDIQGKLRLALGSVKDHASIGKAMMYHYQHDGFSNIEIAVLRATGHDNGTIGDRYMHEILFLVSNSPGSIPFLAERISRRLGKTKDHVVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQINTRCFTKSSDHPSAGFLHKYAAYLEERMSWLINQAGKLEPVMSKGLEFRRYDEKSFDMAFRTLPKCQVLLDKVLECSPHDILCSDHGLAQAAMSNTLRESFQVYMTFSEGIAALVNMFFDLTASARVLACEILKTASLQTQKLHDLYESCKFVVENKNLDYPSVQIISMSHVVALEQLGTQQNELATSHVSLSSISRPPPKSKEMVELEVAAEENRRSEEKIDVNLSPTPTPTLFSWTLETKISMVWVVFEDEVPNESQVLPAQQKLGTVDAVTDMKSEYGRPSVFLNSFSSTFQTSMSSKV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02410 427 CDD ANTH_N_AP180_plant 38 155 - -
Viun4g02410 427 SUPERFAMILY GAT-like domain 175 302 - -
Viun4g02410 427 FunFam Putative clathrin assembly protein At1g33340 170 313 - -
Viun4g02410 427 Gene3D - 8 157 IPR008942 -
Viun4g02410 427 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 360 IPR045192 GO:0048268|GO:0072583
Viun4g02410 427 FunFam putative clathrin assembly protein At1g33340 13 157 - -
Viun4g02410 427 Pfam ANTH domain 38 302 IPR011417 GO:0005543
Viun4g02410 427 SMART enth_2 36 165 IPR013809 -
Viun4g02410 427 SUPERFAMILY ENTH/VHS domain 37 154 IPR008942 -
Viun4g02410 427 Gene3D ANTH domain 169 317 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Viun4g02410 427 ProSiteProfiles ENTH domain profile. 30 163 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02410 Viun-Chr4 39394582 39396779 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02410 - - vra:106762919 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02410 4 39394582 39396779 Viun4g02410 4 39394582 39396779 ECH