Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2106 ATGAAACACTCTCTTGTTTCTTCTTTGCTGCTATTGCTTGTGTTCTTCCTTGCAGCTGGGTCGACCCAGGGGTCCCTGTTGGACATCTGGTCGGACCGTTTCCCAGATCCATTCCGAGTTCTGGAGCAGATCCCCTTGGGCCTCGACAGGGATGCGGACCTAGCCCCCTCTCCAGCCAGGGTGGACTGGAAGGAGACACCTGAGGGACATGTTATCATGATGGACATCCCGGGTCTGAGGAAGGAGGAGGTGAAGATAGAGGTGGACGAGAGCCAAAGAGTGCTGAGGGTGAGCGGGGAGAGGAAGAAGGAAGAGGAGAAGAAAGGTGACCACTGGCACCGGATGGAGAGGTCCTATGGCAAGTTCTGGAGGCAGTTCAGGCTGCCTAATAATGTAGACTTGGAGGGTGTTAAGGCCAAGCTTGAGAATGGGGTGCTCACCTTGTCTTTGCCCAACTTGTCGTCTGATCGGATCAAGGGTCCCAAGGTGGTCAGCATTGCTGGAGGAGATGAGGAAGAGAACCCCAAGCTCAAAAGTGAAACCTCCAAACAGGAACTTTGA 561 0.5401 MKHSLVSSLLLLLVFFLAAGSTQGSLLDIWSDRFPDPFRVLEQIPLGLDRDADLAPSPARVDWKETPEGHVIMMDIPGLRKEEVKIEVDESQRVLRVSGERKKEEEKKGDHWHRMERSYGKFWRQFRLPNNVDLEGVKAKLENGVLTLSLPNLSSDRIKGPKVVSIAGGDEEENPKLKSETSKQEL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2106 186 CDD ACD_ScHsp26_like 60 151 - -
Vvi18g2106 186 MobiDBLite consensus disorder prediction 169 186 - -
Vvi18g2106 186 SUPERFAMILY HSP20-like chaperones 45 162 IPR008978 -
Vvi18g2106 186 ProSiteProfiles CS domain profile. 56 164 IPR007052 -
Vvi18g2106 186 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 52 169 IPR002068 -
Vvi18g2106 186 Pfam Hsp20/alpha crystallin family 62 166 IPR002068 -
Vvi18g2106 186 FunFam 22.0 kDa heat shock protein 23 166 - -
Vvi18g2106 186 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 55 157 IPR031107 -
Vvi18g2106 186 MobiDBLite consensus disorder prediction 164 186 - -
Vvi18g2106 186 Gene3D - 22 167 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2106 Vvi-Chr18 29189164 29189724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2106 K13993 - vvi:100263588 350.903