Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04322 ATGGGTGTGGATATACAAGGCAAGCTTCAATATTTTCTTGGTTCAATGAAAGATCATGCATCAATTGGCAAGGCCATGATGTACCATCATCAACATGATGGCTTTTCCAACATAGAAATTGCTGTTTTGCGTGCCACTTGCCATGATAATGGCACCATTGATGACAAATACATGCATGAAATCCTTTTCCTTGTATCAAACTCTCAAGGGTCAATCCCTTTTCTTGCTGAAAGAATTTCTCGCCGTTTAGGCAAAACTAAGGACCGTTTTGTGGCCCTTAAGACCCTTGTCTTGATTCATCGCCTTCTAAGAGGAGGAAACAGATCCTTTGAACAAGAGCTATGCAAAGCACATGTCTCTGGCCATCTACAAATCAACTTAAGGTGTGTCACAAAAATTTCTGACCCTTCACTTGGTTTCTTGCACAAATATGCATCTTATCTTGAAGAAAGGATGAGTTGGCTCATCAATCAAGCTGGGAAACTTGAACCTGTTATGTCTAAAGGTTTAGAATTTAGGCGCTATGATGAGAAATCTATTGATATGGCATTCAGAACTTTGCCTAAGTGTCAAGTACTCATTGATAAGGTGTTGGAATGTTCCCCACATGATATTTTGAGGTCAGATCATAGCCTTGCTCAAGTTGCTATGAGTAACACCTTGAGAGAAAGCTTTCAAGTTTACATGACATTTTCTGAAGGCATTGCAGCACTTATCAACATGTTTTTTGATCTAACAGCATCTGCTAGAGGCCTAGCTTGTGAAATACTCAAGAAAGCTTCTATTCAGAGCCAGAAGCTTCATGATCTGTATGAAAGTTGCAAACAAGTTGTTGAAAACAAGAATTTGGAATACCCTTCTGTTCAGATAATTAGTATGAATCATGTTATGGCATTGGATCAATTTGGTAGTCCACAAAATCAATTTGGAGGTTCACATGTTTCTCCATCAAGCAAGAGGAATAGTATCTCAAAGCCACCTCCAATTTCAGGACAGTTCAAGAGATCAACAACAGAGATAGAGTTGGAAGTAGAAGCAAAAGAAAGCAAAAAGATTGAAGAGAAAATTGATATAGATTTTTCACCAACACCAACACCAACTCTTTTTTCATGGACACTAGAGACTAAAATAAGCAAAGTTTGGGTTGTATTTGAAGATGAAGTTCCCAATGCATCACAGGTCCTTCCATTTTCATAA 1197 0.3826 MGVDIQGKLQYFLGSMKDHASIGKAMMYHHQHDGFSNIEIAVLRATCHDNGTIDDKYMHEILFLVSNSQGSIPFLAERISRRLGKTKDRFVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQINLRCVTKISDPSLGFLHKYASYLEERMSWLINQAGKLEPVMSKGLEFRRYDEKSIDMAFRTLPKCQVLIDKVLECSPHDILRSDHSLAQVAMSNTLRESFQVYMTFSEGIAALINMFFDLTASARGLACEILKKASIQSQKLHDLYESCKQVVENKNLEYPSVQIISMNHVMALDQFGSPQNQFGGSHVSPSSKRNSISKPPPISGQFKRSTTEIELEVEAKESKKIEEKIDIDFSPTPTPTLFSWTLETKISKVWVVFEDEVPNASQVLPFS. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04322 398 Gene3D - 10 156 IPR008942 -
Seca10g04322 398 ProSiteProfiles ENTH domain profile. 30 162 IPR013809 -
Seca10g04322 398 FunFam putative clathrin assembly protein At1g33340 13 156 - -
Seca10g04322 398 SUPERFAMILY GAT-like domain 173 302 - -
Seca10g04322 398 SMART enth_2 36 164 IPR013809 -
Seca10g04322 398 CDD ANTH_N_AP180_plant 38 154 - -
Seca10g04322 398 Pfam ANTH domain 38 302 IPR011417 GO:0005543
Seca10g04322 398 FunFam Putative clathrin assembly protein At1g33340 169 312 - -
Seca10g04322 398 Gene3D ANTH domain 168 311 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Seca10g04322 398 PANTHER CLATHRIN ASSEMBLY PROTEIN 11 354 IPR045192 GO:0048268|GO:0072583
Seca10g04322 398 MobiDBLite consensus disorder prediction 307 336 - -
Seca10g04322 398 SUPERFAMILY ENTH/VHS domain 37 153 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04322 Seca-Chr10 97815266 97816462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04322 - - ccaj:109794444 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04322 10 97815266 97816462 Seca10g04322 10 97815266 97816462 ECH