Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00524 ATGGGTGTGGACATACAAGGTAAGCTTCGTTTAGCTCTCGGCTCAGTGAAAGATCATGCCTCTATTGGCAAGGCCATGATGTATCACTACCAACATGATGGCTTTTCCAACATAGAGATTGCAGTCCTGCGTGCCACGGGCCATGATAATGGCGCCATTGGGGACAGATACATGCATGAAATCCTCTTTCTTGTGTCAAACTCTCCAGGGTCCATTCCTTTTCTGGCTGAAAGGATTTCACGTCGCCTAGGAAAAACTAAGGATCATGTTGTAGCCCTCAAGACCCTTGTCTTGATTCATCGCCTTCTTAGAGGGGGAAACAGGTCCTTTGAGCAAGAGTTATGCAAGGCACATGTCTCAGGTCACCTACAAATTAGTACAAGGTCTTTCACCAAGAGTTCTGATCACCCTTCAGTTGGTTTCCTACATACATATGCAGCTTATCTTGAAGAGAGGATGAGTTGGCTCATAAACCAAGCAGGGAAACTTGAGCCTGTCATGTCCAAAGGGTTAGAGTTTAGGCGCTATGATGAGAAATCCTTTGATATGGCATTCAGAACATTGCCTAAATGCCAAGTGCTTATTGATAAGGTGTTGGAATGCTCACCACATCATATTTTGTGCTCAGATCATAGCCTGGCTCAAGCTGCTATGAGCAACACCTTGAGAGAAAGCTTCCAAGTGTATATGACATTTTCTGAAGGCATTGCAGCTCTTGTGAACATGTTTTTTGATCTAACAGCATCAGCCAGAGGCCTAGCCTGTGAAATACTCAAGACAGCTTCTCTCCAGAGCCAAAAGCTTCATGATCTGTATGAAAGTTGCAAATATGTGGTTGAAAACAAGAATTTGGATTACCCTTCTGTTCAAATAATCAGTATGAGTCATATAGTGGCATTGGAACAACTTGGTAGTCAACAACATGAACTTGCAACTTCACTTGTCTCTCTATCTAGCATCTCAAGTCCACCTCCAATTTCAGGCCTCTTGACAAAATCAAAAGAGATAGAGTTGGAAGTAGCAGCAGAAGAAAACAAAAGGAATGAAGAGAAATTTGATGTAAACCTGTCACCAACCCCAACTCTTTTTTCATGGACACTAGAGACTAAAATAAGCATGGTGTGGGTGGTGTTTGAAGATGAAGTTCCCAATGAATCACTGGTTCTTCCAGCACAGCAAAAGCTTGGAATTGTTGATGCTGTTACTGGTATAAAAAGTGAATATGGAAGGCCTAGTGTGTTCCTGAATCCATTTACATCTACTTTTCAAACAAGCATGTCATCAAAGGTATGA 1293 0.4223 MGVDIQGKLRLALGSVKDHASIGKAMMYHYQHDGFSNIEIAVLRATGHDNGAIGDRYMHEILFLVSNSPGSIPFLAERISRRLGKTKDHVVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQISTRSFTKSSDHPSVGFLHTYAAYLEERMSWLINQAGKLEPVMSKGLEFRRYDEKSFDMAFRTLPKCQVLIDKVLECSPHHILCSDHSLAQAAMSNTLRESFQVYMTFSEGIAALVNMFFDLTASARGLACEILKTASLQSQKLHDLYESCKYVVENKNLDYPSVQIISMSHIVALEQLGSQQHELATSLVSLSSISSPPPISGLLTKSKEIELEVAAEENKRNEEKFDVNLSPTPTLFSWTLETKISMVWVVFEDEVPNESLVLPAQQKLGIVDAVTGIKSEYGRPSVFLNPFTSTFQTSMSSKV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00524 430 Pfam ANTH domain 38 303 IPR011417 GO:0005543
Phco5g00524 430 SMART enth_2 36 165 IPR013809 -
Phco5g00524 430 CDD ANTH_N_AP180_plant 38 155 - -
Phco5g00524 430 ProSiteProfiles ENTH domain profile. 30 163 IPR013809 -
Phco5g00524 430 Gene3D - 8 157 IPR008942 -
Phco5g00524 430 Gene3D ANTH domain 169 316 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Phco5g00524 430 FunFam Putative clathrin assembly protein At1g33340 170 313 - -
Phco5g00524 430 SUPERFAMILY ENTH/VHS domain 37 154 IPR008942 -
Phco5g00524 430 FunFam putative clathrin assembly protein At1g33340 13 157 - -
Phco5g00524 430 SUPERFAMILY GAT-like domain 175 302 - -
Phco5g00524 430 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 363 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00524 Phco-Chr5 4908054 4909346 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00524 5 4908054 4909346 Phco5g00524 5 4908054 4909346 ECH