Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01887 ATGAGAAACTTAGTACTAGTACCAATGATCTTGCTTGTTCTTGCTGGTTTTCCATCCAAGGCAAAAGGGTTTATGCAACCATTTACAGAACGTCCTGATGCACTCTGGGCTGACATGTTGTCTGATCGTTTCCTTGATCCATTTCGTGCGCTAGAGCAAATCCCATTTGGGGTTGGCAAAGATCAGGCATCCATGGCTGTGTCACCTGCACGAGTAGATTGGAAGGAGACACCAGAGGGACACGTTATAATGATAGATGTGCCAGGGTTGAAGAAAAATGAGATAAAGATAGAAGTGGAGGGGAATACAGTGCTGAGAGTGAGTGGAGAAAGGAAGAAGGAGGAGGAGAAGGAAGGGGATCACTGGCATAGAGTGGAGAGATCTTATGGCAAATTCTGGAGGCAGTTCAAGTTACCAGACAATGTAGATTTTGATTCTCTCAAGGCTAGGTTAGAGAATGGAGTGCTTACTCTCACCATGGCCAAGTTGTCACCTGAAAAGACCAAAGCTTCAAGGGTGGTTAACATTGCAGGGGATGATGAGCTCAAGCAAGATCTTTGA 561 0.4528 MRNLVLVPMILLVLAGFPSKAKGFMQPFTERPDALWADMLSDRFLDPFRALEQIPFGVGKDQASMAVSPARVDWKETPEGHVIMIDVPGLKKNEIKIEVEGNTVLRVSGERKKEEEKEGDHWHRVERSYGKFWRQFKLPDNVDFDSLKARLENGVLTLTMAKLSPEKTKASRVVNIAGDDELKQDL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01887 186 SUPERFAMILY HSP20-like chaperones 59 173 IPR008978 -
Vimu8g01887 186 Gene3D - 24 177 IPR008978 -
Vimu8g01887 186 ProSiteProfiles CS domain profile. 67 174 IPR007052 -
Vimu8g01887 186 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 61 175 IPR031107 -
Vimu8g01887 186 Pfam Hsp20/alpha crystallin family 73 176 IPR002068 -
Vimu8g01887 186 CDD ACD_ScHsp26_like 71 162 - -
Vimu8g01887 186 FunFam 22.0 kDa heat shock protein 33 176 - -
Vimu8g01887 186 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 61 179 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01887 Vimu-Chr8 24538557 24541322 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01887 K13993 - gmx:547971 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01887 8 24538557 24541322 Vimu8g01887 8 24538557 24541322 ECH
Vimu8g01887 8 24538557 24541322 Vimu3g02360 3 38066764 38068153 PCT