Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00658 ATGGGTGTGGATATACAAGGCAAGCTCCGTTTAGCTCTTGGCTCAATGAAAGATCATGCTTCTATTGGCAAGGCCATGATGTACCATCATCAACATGATGGCTTTTCAAGCATAGAGATTGCAGTCTTGCGTGCCACTGGTCATGATAATGGAACCATTGATGACAAATACATGCATGAAATCCTTTTCCATGTATCAAACTCACCAGGGTCAATCCCTTTTCTTGCTGAAAGGATTTCTAGAAGGCTTTGCAAAACTAAGGATCATCTTGTGGCACTCAAGACCCTTGTCTTGATTCATCGCCTTCTTAGAGGAGGAAACAGATCCTTTGAACAAGAGCTATGCAAAGCACATGTCTCTGGTCATTTACAAATCAGCACAAGGTGTTTCACAAAAAGTTCTGACCCTTCATTTGGATTTCTACACAAATATGCAGCTTATCTTGAAGAAAGGATGGGTTGGCTCATCAACCAAGCAGGGAAACTTGAACCTGTTATGTCCAAAGGGTTAGAATTTCGTCGTTATGATGAGAAATCCGTTGATATTGCATTTAGAACATTGCCTAAATGTCAAGTACTCATTGATAGGGTGTTAGATTGTTCCCCACATGATATTTTGCGCTCAGATCATAGCTTGACTCAAGTCGCTATGAGCAACACCTTAAGAGAAAGTTTCCAAGTTTACATGACATTTTCTGAAGGAATTGCAGCTCTTGTCAACATGTATTTTGATCTAACAACATCAGCCAGAGGACTAGCTTGTGAAATACTCAAGAAAGCTTCTCTACAGAGCCAAAAGCTTCATGATCTGTATGAAAGTTGCAAACAAATGGTTGAAAACAAGAATTTGGATTACCCATCTGTTCAGATAATCAGAATGAATCATATAATGGCATTGGAAGAATTTGGTCATCCACAAAATCAACTTGCAGCATCACATGTCTCTCTGTCAAGTAGGAGGAGTATCTCAAAGCCACCTCCAATTGCTGGCCAATTCAAAAGATCAACAGAGATAGAATTGGCAGTAGCAGCAAATGAAAACCAAAAGAATGAAGAGAAAATTGATATAAATTTGTCACCAACCCCAACTCTTTTGTCATGGACACTAGAGACTAAAATAAGCAAGGTATGGGTTGTATTTGAAGATGAAGTTCCCAATGAATCACCAGCACAACAAAAGCTTGTAAGTGTTAATGATGTTGGTGACATAAAAAGTGAATATGGTAGGCCAAGTGTATTCCTGAATCCATTTTCAAAGGTATGA 1263 0.3903 MGVDIQGKLRLALGSMKDHASIGKAMMYHHQHDGFSSIEIAVLRATGHDNGTIDDKYMHEILFHVSNSPGSIPFLAERISRRLCKTKDHLVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQISTRCFTKSSDPSFGFLHKYAAYLEERMGWLINQAGKLEPVMSKGLEFRRYDEKSVDIAFRTLPKCQVLIDRVLDCSPHDILRSDHSLTQVAMSNTLRESFQVYMTFSEGIAALVNMYFDLTTSARGLACEILKKASLQSQKLHDLYESCKQMVENKNLDYPSVQIIRMNHIMALEEFGHPQNQLAASHVSLSSRRSISKPPPIAGQFKRSTEIELAVAANENQKNEEKIDINLSPTPTLLSWTLETKISKVWVVFEDEVPNESPAQQKLVSVNDVGDIKSEYGRPSVFLNPFSKV* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00658 420 Gene3D ANTH domain 168 316 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Rops5g00658 420 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 363 IPR045192 GO:0048268|GO:0072583
Rops5g00658 420 SMART enth_2 36 164 IPR013809 -
Rops5g00658 420 FunFam Putative clathrin assembly protein At1g33340 169 312 - -
Rops5g00658 420 Pfam ANTH domain 38 302 IPR011417 GO:0005543
Rops5g00658 420 CDD ANTH_N_AP180_plant 38 154 - -
Rops5g00658 420 SUPERFAMILY ENTH/VHS domain 37 152 IPR008942 -
Rops5g00658 420 ProSiteProfiles ENTH domain profile. 30 162 IPR013809 -
Rops5g00658 420 Gene3D - 8 155 IPR008942 -
Rops5g00658 420 Coils Coil 333 353 - -
Rops5g00658 420 FunFam putative clathrin assembly protein At1g33340 13 156 - -
Rops5g00658 420 SUPERFAMILY GAT-like domain 173 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00658 Rops-Chr5 11203187 11204449 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00658 - - gmx:100808531 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00658 5 11203187 11204449 Rops5g00658 5 11203187 11204449 ECH