Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01215 ATGGGTGTGGACATACAAGGTAAGCTTCGTTTAGCTCTTGGCTCAGTGAAAGATCATGCCTCTATTGGCAAGGCCATGATGTATCATTACCAACATGATGGCTTTTCCAACATAGAGATTGCAGTGCTGCGTGCCACTGGCCATGATAATGGCACCATTGGTGACAGATATATGCATGAAATCCTCTTTCTTGTGTCAAACTCTCCAGGCTCCATTCCTTTTCTGGCTGAAAGGATTTCACGTCGCTTAGGAAAAACTAAGGATCATGTTGTGGCCCTCAAGACTCTTGTCTTGATTCATCGCCTTCTTAGAGGGGGAAACAGGTCCTTTGAACAAGAATTATGCAAGGCACATGTCTCAGGTCACCTACAGATTAGTACAAGATGTTTCACAAAGAGTTCTGATCACCCTTCAGCTGGTTTTCTACACAAATATGCTGCTTATCTTGAAGAGAGGATGAGTTGGCTCATTAACCAAGCAGGGAAACTTGAGCCTGTCATGTCCAAAGGGTTAGAGTTTAGGCGCTATGATGAGAAATCCTTTGATATGGCATTCAGAACATTGCCTAAATGCCAAGTGCTTATTGATAAGGTGTTGGAATGCTCACCACATGATATTTTGTGCTCAGATCATAGCCTGGCTCAAGCTGCTATGAGCAACACCTTGAGAGAAAGTTTCCAAGTTTATATGACATTTTCTGAAGGCATTGCAGCTCTTGTGAACATGTTCTTTGATCTAACAGAATCAGCCAGAGGCCTAGCCTGTGAAATACTCAAGACAGCTTCTCTCCAGAGCCAAAAGCTTCATGATCTGTATGAAAGTTGCAAATATGTGGTTGAAAACAAGAACTTGGATTACCCTTCTGTTCAAATAATCAGTATGAGTCATATAGTGGCACTGGAACAACTTGGTAGTCAACAAAATGAACTTGCAACTTCACATGTCTCTCTATCTAGCATCTCAAGGCCACCTCCAATTTCAGGCCACTTGACAAAATCAAAAGAGATGATAGAGTTGGAAGTGGCAGCAGAAGAAAACAAAAGGAACCAAGAGAAAATTGATGTAAACCTGTCACCAACCCCAACTCTTTTTTCATGGACACTAGAGACTAAAATAAGCATGGTGTGGGTGGTGTTTGAAGATGAAGTTCCCAATGAATCACAGGTTCTTCCAGCACAGCAAAATCTTGGAACTGTTGATGCTGTTACTGATATAAAAAGTGAATATGGTAGGCCTAGTGTGTTCCTGAATCCATTTTCATCTACTTTTCAAACAAGCATGTCTTCAAAGGTATGA 1296 0.4151 MGVDIQGKLRLALGSVKDHASIGKAMMYHYQHDGFSNIEIAVLRATGHDNGTIGDRYMHEILFLVSNSPGSIPFLAERISRRLGKTKDHVVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQISTRCFTKSSDHPSAGFLHKYAAYLEERMSWLINQAGKLEPVMSKGLEFRRYDEKSFDMAFRTLPKCQVLIDKVLECSPHDILCSDHSLAQAAMSNTLRESFQVYMTFSEGIAALVNMFFDLTESARGLACEILKTASLQSQKLHDLYESCKYVVENKNLDYPSVQIISMSHIVALEQLGSQQNELATSHVSLSSISRPPPISGHLTKSKEMIELEVAAEENKRNQEKIDVNLSPTPTLFSWTLETKISMVWVVFEDEVPNESQVLPAQQNLGTVDAVTDIKSEYGRPSVFLNPFSSTFQTSMSSKV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01215 431 Gene3D - 8 157 IPR008942 -
Vian8g01215 431 FunFam Putative clathrin assembly protein At1g33340 170 313 - -
Vian8g01215 431 Coils Coil 334 354 - -
Vian8g01215 431 SMART enth_2 36 165 IPR013809 -
Vian8g01215 431 CDD ANTH_N_AP180_plant 38 155 - -
Vian8g01215 431 SUPERFAMILY GAT-like domain 175 302 - -
Vian8g01215 431 FunFam putative clathrin assembly protein At1g33340 13 157 - -
Vian8g01215 431 Pfam ANTH domain 38 303 IPR011417 GO:0005543
Vian8g01215 431 ProSiteProfiles ENTH domain profile. 30 163 IPR013809 -
Vian8g01215 431 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 362 IPR045192 GO:0048268|GO:0072583
Vian8g01215 431 Gene3D ANTH domain 169 317 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vian8g01215 431 SUPERFAMILY ENTH/VHS domain 37 154 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01215 Vian-Chr8 30846942 30848237 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01215 - - vra:106762919 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01215 8 30846942 30848237 Vian8g01215 8 30846942 30848237 ECH