Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2110 ATGGGGGTGGACGTACAGGGCAAGCTCCGGCGAGCTCTTGGCTCAGTGAAGGACCATGCTTCCATTGGCAAGGCCATGATATACCATCATGATGGCTTTTCTGACTTAGAGGTGGCGGTGGTGCGAGCAACCGGCCATGATGACAGCCCCATTGATGACAAATACATGCATGAGATCCTCTTCCTTGTCTCTAACTCTCCGTCCTCAATAACTTTTCTTGCTGAAAGAATCTCTCGCCGCCTTGGAAAGACCAGAGACCGCCTGGTGGCCCTCAAGACTCTCGTGCTGATTCATCGCCTTCTGCGTGGAGGCAATCGCTGCTTTGAGCAACAGCTGCGCGGTGCCCATGTTTCAGGGCATCTCCGGATGACTACTGGGTGGTTCCTGATGAGTAATACCGAGCCTTCAGTTTGTTTCCTACACAGGTATGCTGCTTATCTACAAGAAAGAATGGGCTGGGTCATTAACCAAGCTGGAAAGCTTGAACCTGTCATGTCACAAGCCTTGGAGTTGCAGTTCTATGAGGAGAAGTTAATCCATACCGTGTTGCGTAGATTGCCCAGATGTCAAATCCTTCTGGATAGGGTCTTGGATTGCTCACCCTCTGAGATTTCGCCTTCAGACAGCTTGGCTCAAGTGGCCATGAGCAACACCCTGAAAGAAAGCTTCCAAGTTTACATGGCTTTTTGTGAAGGGGTTGCAGCTCTGGTAAATATGTTTTTTGAATTGACGAGACCGGTGAGAGCTCTAGCCTGCAACATACTAAGGAGAGCTTCTCAGCAGAGCCAGGAGCTTCATGATCTGTATGAACATTGCAAAACAATAATTGGGAATAAGAACTTGGAGTACCCATCGGTCCAAATCATATCAATCGATCATGTTCTGGCATTGGAACAACTCTTAAGCTTTACACCAACTCCATATGGTTCTGTACTGACCACCAAAGCAGCTGGCTCTAAGCCGCCTGCTATTTTGGATTACCTTACAAGGTCAACCAAGATGCAGTCGACAAAGACAGGAACAGAAGGCCAAGGCGAGAAAGATGACCACACAAGTGAGAGTACTTTATCACCGACTCTTTTTTCTTGCACGCTAGAGACCAAGATAAGTAAAGTATGGGTGGTGTTTGATGAAGAAGAGTCTGCTGAATCACAGGTCTCTATTGAGAGACTCTTCATCAAAGGTACTGTCAGTAATCTCTCTCAATGA 1209 0.4748 MGVDVQGKLRRALGSVKDHASIGKAMIYHHDGFSDLEVAVVRATGHDDSPIDDKYMHEILFLVSNSPSSITFLAERISRRLGKTRDRLVALKTLVLIHRLLRGGNRCFEQQLRGAHVSGHLRMTTGWFLMSNTEPSVCFLHRYAAYLQERMGWVINQAGKLEPVMSQALELQFYEEKLIHTVLRRLPRCQILLDRVLDCSPSEISPSDSLAQVAMSNTLKESFQVYMAFCEGVAALVNMFFELTRPVRALACNILRRASQQSQELHDLYEHCKTIIGNKNLEYPSVQIISIDHVLALEQLLSFTPTPYGSVLTTKAAGSKPPAILDYLTRSTKMQSTKTGTEGQGEKDDHTSESTLSPTLFSCTLETKISKVWVVFDEEESAESQVSIERLFIKGTVSNLSQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2110 402 SMART enth_2 34 163 IPR013809 -
Vvi18g2110 402 Pfam ANTH domain 35 301 IPR011417 GO:0005543
Vvi18g2110 402 CDD ANTH_N_AP180_plant 36 153 - -
Vvi18g2110 402 Gene3D ANTH domain 174 306 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vvi18g2110 402 MobiDBLite consensus disorder prediction 333 355 - -
Vvi18g2110 402 SUPERFAMILY GAT-like domain 174 301 - -
Vvi18g2110 402 Gene3D - 8 154 IPR008942 -
Vvi18g2110 402 ProSiteProfiles ENTH domain profile. 28 161 IPR013809 -
Vvi18g2110 402 FunFam putative clathrin assembly protein At1g33340 13 155 - -
Vvi18g2110 402 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 341 IPR045192 GO:0048268|GO:0072583
Vvi18g2110 402 SUPERFAMILY ENTH/VHS domain 35 151 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2110 Vvi-Chr18 29243610 29244818 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2110 - - vvi:100262005 795.808