Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1702 ATGAGGCTACACCAACTCATTTTGTTCCTGTTGTTGCTCTTTGTTGCGAAAGCGAAGGGGTCTCTACTACCATTCGATCCTCCCAGAGGCATTTTGGCGGAGCTCTTGTCTGATCGATTCCCAGACCCGTTTCACGTGCTGGAACAAATTCCATTTGGGTTGGAGAAAGATGAACAATCGATGGTGATGCCAGCTGCTAGAGTGGACTGGAAGGAGACCCCAGAGGGGCATGAAATAATGGTGGACGTGCCAGGGTTGAAAAGGGAAGAGATAAAGATAGAAGTGGAAGAGAATAGGGTGCTGAGAGTGAGTGGTGAGAGGAAGAGAGAAGAGGAGAAGAAAGGGGATCACTGGCACAGAGTGGAGAGGTCCTACGGCAAGTTCTGGAGGCAGTTCAGGTTGCCACAAAATGTGGACTTGGACAGTGTGAAGGCTAAGCTCGACAATGGCGTCCTCACTTTGACTCTCAACAAGTTGTCACCGGAAAAGATCAAGGGTCCCAGGGTGGTCACCATTGCCGGGGAGGATCACCAGCCATCCAAGCTCACCAATGATGGAGCCAAGCAGGAACTTTGA 576 0.5069 MRLHQLILFLLLLFVAKAKGSLLPFDPPRGILAELLSDRFPDPFHVLEQIPFGLEKDEQSMVMPAARVDWKETPEGHEIMVDVPGLKREEIKIEVEENRVLRVSGERKREEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLDNGVLTLTLNKLSPEKIKGPRVVTIAGEDHQPSKLTNDGAKQEL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1702 191 Pfam Hsp20/alpha crystallin family 69 172 IPR002068 -
Vra8g1702 191 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 59 175 IPR002068 -
Vra8g1702 191 CDD ACD_ScHsp26_like 67 158 - -
Vra8g1702 191 SUPERFAMILY HSP20-like chaperones 60 169 IPR008978 -
Vra8g1702 191 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 6 182 - -
Vra8g1702 191 MobiDBLite consensus disorder prediction 172 191 - -
Vra8g1702 191 Gene3D - 30 174 IPR008978 -
Vra8g1702 191 ProSiteProfiles CS domain profile. 63 170 IPR007052 -
Vra8g1702 191 PANTHER 22.0 KDA HEAT SHOCK PROTEIN 6 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1702 Vra-Chr8 34201651 34202565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1702 K13993 - gmx:100526965 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1702 8 34201651 34202565 Vra8g1702 8 34201651 34202565 ECH
Vra1g0884 1 10298726 10299892 Vra8g1702 8 34201651 34202565 PCT