Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0828 ATGGGTGTGGATATTCAAGGGAAGCTTCGTCTAGCTCTTGGCTCAATGAAAGATCATGCTTCTATTGGCAAGGCCATGATGTATCATCATCAACATGATGGCTTTTCCAACATAGAGATAGCGGTTCTGCGTGCCACAGGCCATGATAATGGCACCATTGATGACAAATACATGCATGAGATCCTTTTCCTTGTATCAAACTCTAAAGGGTCTATTCCTTTTCTTGCTGAAAGGATTTCACGCCGTCTTGGCAAAACTAAGGATCATATTGTGGCCCTCAAGACCCTTGTCTTGATTCATCGCCTTCTTAGAGGTGGAAACAGGTCCTTTGAACAAGAGCTATGCAAAGCACATGTATCTGGTCATCTTCAAATTAGTACAAGGTGTTTCACAAAGAATTCTGACCCTTCAGTTGTTTTCTTACACAATTATGCAACTTACCTTGAAGAAAGGATGAGTTGGCTCATCAACCAAGCAGGGAAACTTGAACCTGTTATGTCCAAAGGGTTAGAATTTAGGCGCTACGATGAAAAATCCATTGATATTGCATTCAGAACGTTGCCTAAATGCCAAGTGCTTATTGATAAAGTGTTAGAATGCTCTCCACATGATATGTTGCTCTCAGATAATAGCTTGGCTCAAGCCGCCATGAGCAACACCTTGAGAGAAAGCTTCCAAGTTTATATGACATTTTCTGAAGGCATTGCAGCTCTTGTCAACATGTTTTTTGATCTAACAGCATCAGCCAAAGGCCTAGCCTGTGAAATACTCAAGAAAGCTTCTCTCCAGAGCCAAAAGCTTCATGATCTGTATGAAAATTGCAAACAAGTGGTTGAAAACAAGAACTTGGAATACCCTTTTGTTCAAATAATCAGCATGAATCATATAGTGGCACTAGAACAATTTGGTAGCCCACAAAATCAACTTGCGGCTTCACATGTCTCTCTATCTAGAAGGAGGAGTATCTCAAATCCTCCTCCAATTCATGGCCACTTCAAACGATCAACAGAGATAGAGTTGGAAGTGGCAGCAAAAGAAAGCAAAAAGAATGAAGAGAAAATTGATATAAACTTGTCACCAACCCCAACTCTTTTTTCATGGACACTAGAGACTAAAATAAGCAAGGTGTGGGTGGTGTTTGAAGATGAAGTTTCCAATGAATCACAGGTCCTTCCAGCACAACCAAAACTTGGAGATATTGGTGATGTTAGTGATATAAAAAGTGAATATGGTAGGCCAAGTTTGTTCCTAAATCCATTTTCTTCTAGTATTCAAACAAGCATGTCTCCAAAGGTATGA 1299 0.4011 MGVDIQGKLRLALGSMKDHASIGKAMMYHHQHDGFSNIEIAVLRATGHDNGTIDDKYMHEILFLVSNSKGSIPFLAERISRRLGKTKDHIVALKTLVLIHRLLRGGNRSFEQELCKAHVSGHLQISTRCFTKNSDPSVVFLHNYATYLEERMSWLINQAGKLEPVMSKGLEFRRYDEKSIDIAFRTLPKCQVLIDKVLECSPHDMLLSDNSLAQAAMSNTLRESFQVYMTFSEGIAALVNMFFDLTASAKGLACEILKKASLQSQKLHDLYENCKQVVENKNLEYPFVQIISMNHIVALEQFGSPQNQLAASHVSLSRRRSISNPPPIHGHFKRSTEIELEVAAKESKKNEEKIDINLSPTPTLFSWTLETKISKVWVVFEDEVSNESQVLPAQPKLGDIGDVSDIKSEYGRPSLFLNPFSSSIQTSMSPKV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0828 432 Pfam ANTH domain 38 302 IPR011417 GO:0005543
Apr6g0828 432 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 389 IPR045192 GO:0048268|GO:0072583
Apr6g0828 432 CDD ANTH_N_AP180_plant 38 154 - -
Apr6g0828 432 Gene3D - 9 156 IPR008942 -
Apr6g0828 432 ProSiteProfiles ENTH domain profile. 30 162 IPR013809 -
Apr6g0828 432 PANTHER CLATHRIN ASSEMBLY PROTEIN-RELATED 1 389 - -
Apr6g0828 432 SUPERFAMILY GAT-like domain 174 302 - -
Apr6g0828 432 SMART enth_2 36 164 IPR013809 -
Apr6g0828 432 Gene3D ANTH domain 168 316 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Apr6g0828 432 SUPERFAMILY ENTH/VHS domain 37 153 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0828 Apr-Chr6 12744753 12746060 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0828 - - gmx:100808531 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0828 6 12744753 12746060 Apr6g0828 6 12744753 12746060 ECH