Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2115 ATGCGAGCGAGGATGAGAGCTGTGGCAGTAACGGCTCCTCATGCCCTGTTCTCGTTACCATCGACGCCATCAGCCAGCGCTAGCAGCAGTAGCACTGCCATTAATTTTGATTCAGTTTCACGTTTCCGGCGCCTGGGGTTGTTCAGATTCAGAGCAAGAGTCCGTCACCGTAAGCCAATTCTGAATGCCGCGTCTTCGGCGGGAGCGGTGGAGGTGGGGTTCAGGGAGATTCAGGAGAAGTGCAGCAAATGGCAGTGGAAGGGCCATACCATTAGTTATCTTGTTGTTCATCCTCCACAAGCTTGCTCAAGTGATCCCCCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCTTGGTTTTGGTGCATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATAGGGAACTCTGTTGGGAGTCTTGCTTGTGTCATTGCTGCCTCAGAATCTACTAATGCCTTGGTTCGAGGGCTTGTACTATTAAACTGTGCTGGTGGCATGAACAACAAGGCAGTTGTTGATGATTGGAGAATCAAGTTGTTGTTACCCCTGCTCTGGTTGTTTGATTTCTTATTGAAGCAACGAGGAATTGCTTCATCAATCTTTGAGCGTGTCAAACAAAGAGATAATCTGAGGAACATCTTATTATCAATTTATGGGAATAAGGAATCAGTGGATGAAGATCTGCTACAGATCATTAAGGAACCGGCGGATGATGAAGGGGCACTGGATGCTTTTGTTTCCATTGTCACAGGCCCACCAGGGCCCAACCCAGTGCAGTTAATGCCAAGACTCTCCTTGCCTATTCTAGTCTTATGGGGCAACCAAGACCCATTCACCCCTCTTGATGGCCCTGTAGGTAAATACTTCGCTTCCCTGCCTTCTCAGCAACCCAATATAAGCCTCTTTATATTGGAGGGAGTAGGACATTGTCCCCATGATGACAGACCTGATTTAGTCCATGAAAAGTTGATTCCTTGGTTGGCTTCTCTTCCTACTTCATGA 1134 0.4691 MRARMRAVAVTAPHALFSLPSTPSASASSSSTAINFDSVSRFRRLGLFRFRARVRHRKPILNAASSAGAVEVGFREIQEKCSKWQWKGHTISYLVVHPPQACSSDPPVLLVHGFGASIAHWRRNIMILAESQTVYAIDLLGFGASDKPSGFAYTMEIWAQLILDFLDEIVRKPTVLIGNSVGSLACVIAASESTNALVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLFDFLLKQRGIASSIFERVKQRDNLRNILLSIYGNKESVDEDLLQIIKEPADDEGALDAFVSIVTGPPGPNPVQLMPRLSLPILVLWGNQDPFTPLDGPVGKYFASLPSQQPNISLFILEGVGHCPHDDRPDLVHEKLIPWLASLPTS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2115 377 Pfam Alpha/beta hydrolase family 108 364 IPR000073 -
Vvi18g2115 377 Gene3D alpha/beta hydrolase 77 373 IPR029058 -
Vvi18g2115 377 PRINTS Alpha/beta hydrolase fold signature 131 146 IPR000073 -
Vvi18g2115 377 PRINTS Alpha/beta hydrolase fold signature 312 326 IPR000073 -
Vvi18g2115 377 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 50 373 - -
Vvi18g2115 377 FunFam Predicted protein 71 373 - -
Vvi18g2115 377 Coils Coil 374 377 - -
Vvi18g2115 377 SUPERFAMILY alpha/beta-Hydrolases 80 373 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2115 Vvi-Chr18 29311326 29315306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2115 74 374 Miscellaneous Gene Families AT1G80280 25.617 1.28e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2115 - - vvi:100244872 705.286