Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g1119 . . . Aed2g0603 . . . . . . . . . . . . . . . . . . . . Gso7g0545 . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01906 . . . . . . . Vimu9g00195 . . .
Pvu10g1120 . . Adu02g00276 . . . . Aip02g00214 . Amo12g0208 . Apr10g1272 . . . . . . . . . . . . . . . . . . . . . Lasa4g00850 . . . . . Mal5g1235 . . . . . Phco1g00661 . . Pste6g01935 . . . . Ssu4g2881 . Tpr5g1376 . Tsu08g01000 . . Vimu9g00192 . Vivi7g04349 Vra9g0496
Pvu10g1121 . . . Aed2g0602 Aev02g0230 . . . . . . . . . . . . . . . . . Gma07g00572 . Gso7g0543 . . . . . . . . . . . . . . . Mepo1g03836 Mesa29g04451 . Mtr8g0869 . . . . . . . . Spst4g01907 Ssu4g2882 . . Trre15g01089 . . . . . Vivi7g04348 .
Pvu10g1122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi5g05125 .
Pvu10g1123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00660 . . . . . . . . . . . . . . . . . .
Pvu10g1125 . . . Aed2g0601 Aev02g0229 . . . . . . Apr10g1271 . Bach6g00622 . Bva02g01982 Car07g02811 . . Dod07g2012 . . Gma07g00571 . . . Lal6g1009 . Lal18g0263 Lan11g0976 . . Lapu10g00182 Lasa4g00849 . . . . Lja3g1824 Mal5g1232 Mepo1g03838 Mesa29g04453 . Mtr8g0868 Phac10g01357 Phco1g00659 . Psa4g4913 Pste6g01929 . . . Spst4g01908 Ssu4g2883 . Tpr5g1380 Trre15g01084 Tsu08g00997 . . Vimu9g00191 . Vivi7g04347 Vra9g0495
Pvu10g1126 . . . Aed2g0600 Aev02g0228 . . . . . . Apr10g1270 . Bach6g00620 . Bva02g01985 Car07g02813 Cca01g02359 . Dod07g2014 . . Gma07g00570 Gma16g00269 Gso7g0542 Gso16g0245 Lal6g1010 Lal22g0899 . Lan11g0977 . . Lapu10g00183 Lasa4g00848 . . . . Lja3g1823 Mal2g1831 Mepo1g03839 Mesa29g04454 . Mtr8g0867 Phac10g01358 Phco1g00657 . Psa4g3669 Pste6g01926 Pumo7g00720 Rops4g01575 Seca4g11383 Spst4g01910 Ssu4g2884 . Tpr5g1381 Trre15g01083 Tsu08g00995 Vian9g00594 . Vimu9g00190 Viun10g02074 Vivi7g04346 Vra9g0494
Pvu10g1127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lal Lal18g0263 Chr18 2184859 2187953 +
Mal Mal2g1831 Chr2 22065931 22067979 -
Pvu Pvu10g1119 Chr10 36750638 36751141 +
Aed Aed2g0603 Chr2 4368687 4369259 -
Gso Gso7g0545 Chr7 5517503 5518258 -
Spst Spst4g01906 Chr4 59725359 59725874 +
Vimu Vimu9g00195 Chr9 2487308 2487733 -
Pvu Pvu10g1120 Chr10 36756871 36759466 -
Adu Adu02g00276 Chr02 2967299 2968239 -
Aip Aip02g00214 Chr02 3008152 3009419 -
Amo Amo12g0208 Chr12 3112372 3114665 +
Apr Apr10g1272 Chr10 25085908 25091317 +
Lasa Lasa4g00850 Chr4 40096233 40099405 +
Mal Mal5g1235 Chr5 21803268 21806496 +
Phco Phco1g00661 Chr1 6062890 6066650 +
Pste Pste6g01935 Chr6 8965112 8968874 +
Ssu Ssu4g2881 Chr4 73603911 73606375 -
Tpr Tpr5g1376 Chr5 26659226 26664364 -
Tsu Tsu08g01000 Chr08 10978243 10980675 +
Vimu Vimu9g00192 Chr9 2450037 2454875 +
Vivi Vivi7g04349 Chr7 113259443 113259902 +
Vra Vra9g0496 Chr9 5171916 5176920 +
Pvu Pvu10g1121 Chr10 36759569 36760802 -
Aed Aed2g0602 Chr2 4362227 4367478 +
Aev Aev02g0230 Chr02 1690918 1695179 +
Gma Gma07g00572 Chr07 5523818 5526258 +
Gso Gso7g0543 Chr7 5506598 5512433 +
Mepo Mepo1g03836 Chr1 44674979 44678988 -
Mesa Mesa29g04451 Chr29 73385113 73388395 -
Mtr Mtr8g0869 Chr8 10650413 10654766 +
Spst Spst4g01907 Chr4 59726913 59742526 -
Ssu Ssu4g2882 Chr4 73606521 73607054 -
Trre Trre15g01089 Chr15 8426075 8429603 +
Vivi Vivi7g04348 Chr7 113243742 113247374 +
Pvu Pvu10g1122 Chr10 36767963 36769212 -
Vivi Vivi5g05125 Chr5 152062830 152066072 +
Pvu Pvu10g1123 Chr10 36769714 36770088 -
Pvu Pvu10g1124 Chr10 36777854 36783107 +
Phco Phco1g00660 Chr1 6047305 6051713 -
Pvu Pvu10g1125 Chr10 36808266 36811165 +
Aed Aed2g0601 Chr2 4353719 4354936 -
Aev Aev02g0229 Chr02 1673181 1674398 -
Apr Apr10g1271 Chr10 25067078 25070169 -
Bach Bach6g00622 Chr6 4594948 4596165 -
Bva Bva02g01982 Chr02 21002340 21005182 +
Car Car07g02811 Chr07 53744310 53747017 +
Dod Dod07g2012 Chr07 50980557 50983699 +
Gma Gma07g00571 Chr07 5516793 5517572 -
Lal Lal6g1009 Chr6 7208885 7211434 +
Lal Lal18g0263 Chr18 2184859 2187953 +
Lan Lan11g0976 Chr11 10525542 10528388 +
Lapu Lapu10g00182 Chr10 3671108 3674252 +
Lasa Lasa4g00849 Chr4 39779911 39781125 -
Lja Lja3g1824 Chr3 20652398 20655533 -
Mal Mal5g1232 Chr5 21764731 21765945 -
Mepo Mepo1g03838 Chr1 44732906 44736234 +
Mesa Mesa29g04453 Chr29 73441044 73442258 +
Mtr Mtr8g0868 Chr8 10631457 10634722 -
Phac Phac10g01357 Chr10 36227648 36231663 +
Phco Phco1g00659 Chr1 6028361 6029578 -
Psa Psa4g4913 Chr4 425106677 425110141 -
Pste Pste6g01929 Chr6 8925205 8926422 -
Spst Spst4g01908 Chr4 59743581 59744798 +
Ssu Ssu4g2883 Chr4 73632792 73634009 +
Tpr Tpr5g1380 Chr5 26716473 26719640 +
Trre Trre15g01084 Chr15 8396630 8399671 -
Tsu Tsu08g00997 Chr08 10948000 10950960 -
Vimu Vimu9g00191 Chr9 2410058 2411275 -
Vivi Vivi7g04347 Chr7 113145324 113148102 -
Vra Vra9g0495 Chr9 5144511 5147536 -
Pvu Pvu10g1126 Chr10 36828285 36832617 +
Aed Aed2g0600 Chr2 4338931 4343327 -
Aev Aev02g0228 Chr02 1662589 1665869 -
Apr Apr10g1270 Chr10 25049573 25054584 -
Bach Bach6g00620 Chr6 4578091 4581599 -
Bva Bva02g01985 Chr02 21016713 21020166 +
Car Car07g02813 Chr07 53767481 53768413 +
Cca Cca01g02359 Chr01 52190081 52194704 +
Dod Dod07g2014 Chr07 50994482 50997262 +
Gma Gma07g00570 Chr07 5503195 5507833 -
Gma Gma16g00269 Chr16 2852260 2856267 -
Gso Gso7g0542 Chr7 5488045 5492698 -
Gso Gso16g0245 Chr16 2815644 2820299 -
Lal Lal6g1010 Chr6 7226365 7230742 +
Lal Lal22g0899 Chr22 7086003 7089729 +
Lan Lan11g0977 Chr11 10550614 10555039 +
Lapu Lapu10g00183 Chr10 3685549 3689899 +
Lasa Lasa4g00848 Chr4 39665523 39667011 -
Lja Lja3g1823 Chr3 20628351 20633983 -
Mal Mal2g1831 Chr2 22065931 22067979 -
Mepo Mepo1g03839 Chr1 44750015 44752960 +
Mesa Mesa29g04454 Chr29 73520004 73521724 +
Mtr Mtr8g0867 Chr8 10616472 10619702 -
Phac Phac10g01358 Chr10 36246621 36251005 +
Phco Phco1g00657 Chr1 6004840 6008574 -
Psa Psa4g3669 Chr4 308714873 308716939 +
Pste Pste6g01926 Chr6 8896977 8901479 -
Pumo Pumo7g00720 Chr7 12155296 12160038 -
Rops Rops4g01575 Chr4 38923253 38927574 +
Seca Seca4g11383 Chr4 252676282 252680364 +
Spst Spst4g01910 Chr4 59757290 59760726 +
Ssu Ssu4g2884 Chr4 73666249 73670468 +
Tpr Tpr5g1381 Chr5 26766265 26769269 +
Trre Trre15g01083 Chr15 8380961 8383008 -
Tsu Tsu08g00995 Chr08 10928413 10930724 -
Vian Vian9g00594 Chr9 7008771 7012184 -
Vimu Vimu9g00190 Chr9 2376367 2379752 -
Viun Viun10g02074 Chr10 35651507 35655066 +
Vivi Vivi7g04346 Chr7 113115985 113117842 -
Vra Vra9g0494 Chr9 5125843 5129799 -
Pvu Pvu10g1127 Chr10 36873393 36873683 -
Pvu Pvu10g1128 Chr10 36873995 36874657 -