Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1823 ATGGCAGAAAACTGGAAGCAGCAATGGGCGATGGTGGTGGGGAAAAGGGAAGAAGGACCTTCTACTCCACCACCAACATGGAGACTTGAGCAGAATGGTAGTGGTGACAGCAAAAACCCGGTTCAAGAGTTCCTCAATGTTCCCATTTCTACAGTTTCTGCAAGGAAGCTCTGTGCTAACCTCTGGGAAATTCAGCCCCACCACCAACAAACCCCACTTGCCAAAATGAACAAAACCGGCACCACACTCCGCCGCCGGCGCCGCCGTAGGGACAGAGTGGCTGAGCCTTCTTCCAACACCCCTTCTGACAAGCCAGCATCTGCTAGTAGTGTGAGAAGACATGTTGCTGCATCACTTGTTCAGCACCATAGATCAGTTGAGAGCAATGGCAGTGCTCAACAGCCTGTATCACCCACTTGTTCCAGCAGTTCAGTGGAAGTGGCACCATATAAATCTGCAGTAACTCCCACAAGTTCCTTAGACTTCAAAGGCATGGTTGGCGAGTCTAGTTACGGTCTTACAACATCCACAGAGTTACTTAAGACACTCAACCGTATCTGGAGTCTTGAAGAACAGCACGCATCAAATATATCACTAGTGAAAGCCTTAAAAACTGAACTATATCACTCTCAGACTCAGATTAAGGAGTTACTAAGTGAGAAGCAAATGAATAGGAAGGAAATAGAGAACTTGATGAAGCACATGACAGTGGACAGACTTGTTAGGAAGAGCAAAGAACATGACAGAATTAAAGCTGCAGTTCAACCAATCAAGGAAGAGCTAGAAGATGAAAGGATGTTACGAGAGCATTCTGAAAGTTTGCATCGGAAGCTGGCCAGGGAGCTTTCTGAAGTAAAGTCTTCGTTCTCCGGCTGTCGGAGAAATCTAGTAAGAGAGAGGAAAGCACGAATCCTTTTGGAAAATTTGTGCGATGAGTTCGCCAAAGGAATCAGAGATTACGAGCAAGAGGTACACTCTCTTAGGCGGAATTCGGAGAAGGGTCAGGTTAAAGGCAACAATAGCCTTGATAGGCTGATACTTCATATTTCAGAAGCTTGGCTTGATGAGCGCATGCAAATGAAGCTAGCCGAATCCGGCAGCGATCTCGTAGATAGAACGTCAATTGTTGACAAGTTAGGCTTCGATATTGAAACATTTCTTCATGCGAGAAAATCTGTTGATTTGAAAAAATATGGTTACTCCTCCCCGAAGGAGCTCAAGGAAATTTACCCTTGTCAGCATTCACTGGAATCCTTTCCACTACATGAGGTTGGAAGTGCACCCCAGAATTTGGCTCAGGAAGATTCCATTGACAGCAGGACTTTGTTAAAGGAAGAGGCCAAACAAGATCCAAAGGAAAGTGATAGTGCCAGACCAAACCAGATTGGAAACAGTTCCTTGTTGTCATCAGAAGGTGATAAGATTTATCCTGAGAGTATTTGCAGGGAAGATTCTTGTGTCCAGTCTGCAGTTACAGCTAATGGTGGTCATGTGAAAGTGTGGAAATTGAAGTTGAGTGCTTCAGATTTTGACAACTCTGAGTCTCCTACCAAATTGCCTAAGGGAGTAAAGGAAAACACATTGATGGCAAAACTGCTAGAAGCAAGATTAGAGGGACAGAGAAATCGCTCTAGAGCTGGCAAAAGCACTTCCTAA 1656 0.4499 MAENWKQQWAMVVGKREEGPSTPPPTWRLEQNGSGDSKNPVQEFLNVPISTVSARKLCANLWEIQPHHQQTPLAKMNKTGTTLRRRRRRRDRVAEPSSNTPSDKPASASSVRRHVAASLVQHHRSVESNGSAQQPVSPTCSSSSVEVAPYKSAVTPTSSLDFKGMVGESSYGLTTSTELLKTLNRIWSLEEQHASNISLVKALKTELYHSQTQIKELLSEKQMNRKEIENLMKHMTVDRLVRKSKEHDRIKAAVQPIKEELEDERMLREHSESLHRKLARELSEVKSSFSGCRRNLVRERKARILLENLCDEFAKGIRDYEQEVHSLRRNSEKGQVKGNNSLDRLILHISEAWLDERMQMKLAESGSDLVDRTSIVDKLGFDIETFLHARKSVDLKKYGYSSPKELKEIYPCQHSLESFPLHEVGSAPQNLAQEDSIDSRTLLKEEAKQDPKESDSARPNQIGNSSLLSSEGDKIYPESICREDSCVQSAVTANGGHVKVWKLKLSASDFDNSESPTKLPKGVKENTLMAKLLEARLEGQRNRSRAGKSTS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1823 551 PANTHER INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-RELATED 4 448 - -
Lja3g1823 551 PANTHER GB|AAF24581.1 4 448 IPR043424 -
Lja3g1823 551 Coils Coil 310 337 - -
Lja3g1823 551 Coils Coil 214 234 - -
Lja3g1823 551 MobiDBLite consensus disorder prediction 122 148 - -
Lja3g1823 551 MobiDBLite consensus disorder prediction 456 471 - -
Lja3g1823 551 MobiDBLite consensus disorder prediction 12 40 - -
Lja3g1823 551 MobiDBLite consensus disorder prediction 25 40 - -
Lja3g1823 551 PANTHER GB|AAF24581.1 449 547 IPR043424 -
Lja3g1823 551 MobiDBLite consensus disorder prediction 445 471 - -
Lja3g1823 551 MobiDBLite consensus disorder prediction 69 148 - -
Lja3g1823 551 PANTHER INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-RELATED 449 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1823 Lja-Chr3 20628351 20633983 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1823 - - gmx:100804057 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1823 3 20628351 20633983 Lja3g1823 3 20628351 20633983 ECH
Lja1g0122 1 1027229 1030363 Lja3g1823 3 20628351 20633983 PCT