Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2883 ATGGCGGGAGACACATCGTGGATCGACCACTATGATGATGGCGCACCAAGGGAGACCAGGGAGTTCgattcatttttgaaatttgatgagGAAGTTGATAATGAAGGAACTGCTGTTTCTGTGGACTTACTTTTGCCTGATGAATTGGTGGAGCGTATCCTAGCCTATCTCCCCATTGCAAGCATTTTCAGAGCAGGTTGTGTGTGTAAGAGATGGTATGAGATTGTTACTTCTGAAAGGTTTTTATTGAACCCTCCCCATTCACTGCCACAGAAACCTTGGTACTTTATGTTTACCAACTCAGATTACCCAACTGGTTATGCTTATGATCCCATCCTTCGGAAATGGTATGGCATTAAACTTCCCTTTATTGAAAATTCTAATTGTTTCATTGCTTCGTCGTATGGTTTAGTTTGCTTCATGGAAAATGACAGCATAAGCAAATTATGCATGTGCAACCCTATTACCAAAAGCTGCAGGGAGCTTGAGGAGCCTCCAGGTTTGAAATTTTCTGATTACAGTGCATTGGCAATGTCAGTGAACAGGAAATCCCGCAGTTACACTATGGCAATTGTGAAATCAAAGCAAATCCCTGAGGATTTTTTCCAGTGGGATATCTCAATTCATATATACGATTCAAAGAAAGAGACCTGGATGACAACTTTAACAGAGGTTTTGATGGGGTGGAGAGGTGGTAATGAGAGTGTGATATGCAACGGTGTGCTATACTTTTTAGTTTACTCAGCCGGGGGTGTTCCATCAGAAAGTCGGCATGCACTGATTGCATATAATATCTCCAATCGTTCTTCGCTAGCTTCCTTGAGAAGGAGCTTTATTGCTGTACCTTGTTCGCTAACATGTGGCCGTCTGATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGTAAGCATGATCGACACGGCATAATAAGAGGAATTGGTATCTGGGTTCTTAATGATAGAAAGTGGGAAGAGATTGTTCGAATGCCCCACAAATACTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGCTGTGGTACAGATGATCtgatatatattcaaagttATGGCTCTCCAGCACTTATCACATTTGACATGAACCTTAAACAATGGAAATGGTCACAGAAATGCCCAATAACAAAGAAGTTCCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCTAGGCTTGAAATTGCTCCATAG 1218 0.4089 MAGDTSWIDHYDDGAPRETREFDSFLKFDEEVDNEGTAVSVDLLLPDELVERILAYLPIASIFRAGCVCKRWYEIVTSERFLLNPPHSLPQKPWYFMFTNSDYPTGYAYDPILRKWYGIKLPFIENSNCFIASSYGLVCFMENDSISKLCMCNPITKSCRELEEPPGLKFSDYSALAMSVNRKSRSYTMAIVKSKQIPEDFFQWDISIHIYDSKKETWMTTLTEVLMGWRGGNESVICNGVLYFLVYSAGGVPSESRHALIAYNISNRSSLASLRRSFIAVPCSLTCGRLMNMKEKLVMVGGIGKHDRHGIIRGIGIWVLNDRKWEEIVRMPHKYFQGFGEFDDVFASCGTDDLIYIQSYGSPALITFDMNLKQWKWSQKCPITKKFPLQLFTGFCFEPRLEIAP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2883 405 SUPERFAMILY F-box domain 44 125 IPR036047 GO:0005515
Ssu4g2883 405 Gene3D - 37 83 - -
Ssu4g2883 405 ProSiteProfiles F-box domain profile. 45 85 IPR001810 GO:0005515
Ssu4g2883 405 SMART fbox_2 45 85 IPR001810 GO:0005515
Ssu4g2883 405 PANTHER OS02G0260200 PROTEIN 3 404 - -
Ssu4g2883 405 TIGRFAM F_box_assoc_1: F-box protein interaction domain 136 339 IPR017451 -
Ssu4g2883 405 Pfam F-box domain 44 82 IPR001810 GO:0005515
Ssu4g2883 405 SUPERFAMILY Galactose oxidase, central domain 106 383 IPR011043 -
Ssu4g2883 405 PANTHER F-BOX FAMILY PROTEIN 3 404 IPR045048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2883 Ssu-Chr4 73632792 73634009 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2883 - - gmx:100817678 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0174 4 2852619 2853833 Ssu4g2883 4 73632792 73634009 PCT