Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g1109 . . . . . . . . . . . . . . . . Car07g02808 Cca01g02358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pumo7g00723 Rops4g01573 Seca4g11381 . . . . . . Vian9g00596 Vifa4g00973 . Viun10g02068 . .
Pvu10g1110 . . . . . . . . . . . . . . . . . . . . . . . Gma16g00271 . . Lal6g1008 . . Lan11g0975 . . . . . . . . Lja3g3808 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00665 . . . . . . . . . . . . . . . . . .
Pvu10g1114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g1236 . . . . . Phco1g00662 . . . . . . . . . . . . . . Vimu9g00196 . . .
Pvu10g1116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lja Lja3g3808 Chr3 75030823 75033333 +
Pvu Pvu10g1109 Chr10 36616094 36616960 -
Car Car07g02808 Chr07 53693832 53697737 -
Cca Cca01g02358 Chr01 52174836 52180326 -
Pumo Pumo7g00723 Chr7 12202260 12202988 +
Rops Rops4g01573 Chr4 38866593 38870633 -
Seca Seca4g11381 Chr4 252625684 252629690 -
Vian Vian9g00596 Chr9 7053816 7057544 +
Vifa Vifa4g00973 Chr4 280902977 280905965 -
Viun Viun10g02068 Chr10 35602474 35606954 -
Pvu Pvu10g1110 Chr10 36626317 36627585 -
Gma Gma16g00271 Chr16 2872372 2874786 +
Lal Lal6g1008 Chr6 7185167 7190185 -
Lan Lan11g0975 Chr11 10444683 10459946 -
Lja Lja3g3808 Chr3 75030823 75033333 +
Pvu Pvu10g1111 Chr10 36627587 36635135 +
Pvu Pvu10g1112 Chr10 36649999 36650439 +
Pvu Pvu10g1113 Chr10 36664977 36665495 +
Phco Phco1g00665 Chr1 6090024 6090470 -
Pvu Pvu10g1114 Chr10 36683253 36683756 +
Pvu Pvu10g1115 Chr10 36706961 36707479 +
Mal Mal5g1236 Chr5 21810135 21810638 -
Phco Phco1g00662 Chr1 6071564 6078272 -
Vimu Vimu9g00196 Chr9 2496078 2499674 -
Pvu Pvu10g1116 Chr10 36710691 36710953 -
Pvu Pvu10g1117 Chr10 36711193 36711595 -
Pvu Pvu10g1118 Chr10 36713570 36713710 -