Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00659 ATGGCGGGAGACTCATCATGGATAAGCCACTTAGATGATGGAGCACGTAGGGAGACTAGGGAGTTTGATTCAGTTTTGGAATTTGGTGAGGAAGTTGATACTGAGGGAACTGCTGTGTCTGTGAACACAGTGTTACCTGATGAATTGGTGGAGCGAATCCTAGCCTATCTCCCCGTTGTAAGCATTTTCAGAGCAAGTTCTGTGTGTAAAAGATGGCATGAGATTGTTACTTCTGAAAGGTTTCTATGGAACCCTTCCAATTCATTGCCACAGAGACCTTGGTACTTTATGTTCACTTACTCAGATGAACCAACTGGTTTTGCTTATGATCCCATCCTTCGGAAATGGTATGGCATTGAGCTTCCCTTCATCGAAACATCTAGCTGGTTCGTTGTTTCTTCTTATGGTTTAGTTTGCTTCATGGACAATGACAGCAGAAGCAAATTATGCATGTGCAACCCTATTACCAAAAGGTGCAGAAGGCTTGAGGGTCCTCCGGGTTTGAAATTTTCTGATTACAGTGCATTGGCAATGTCTGTGAACAAGAAATCCCACAGTTACACTCTGGCAATTGTGAAATCAAAACAAATCCCTGAGGATTTTGTCCAGTGGGAGATCTCAATTCATATATACCACTCACAGAAAGAGACCTGGATGACAACTTCAACAGAGGTTTTGATGGGGTGGAGAGGTGGTAATGAGAGTGTGATATGCAATGGTGTGTTATACTTTTTAGTCTACTCAGCTGGGGGTGTTCCTTCAGAAAGTAGGCATGCACTGATTGCATATAATATCTCTAATCTCACTTCTCAAGCCACCTTGCGAAGGAGCTTTATTGCGGCACCCTGTTCACTAACATGTGGCCGTTTGATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGTAAGCTAGATCGACCTGACATAATAAAAGGAATTGGCATCTGGGTTCTTAACGATAGTAAGTGGGAAGAGATTGTCCGAATGCCCCACAAATACTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGCAGTGGTACTGATGATCAAATATATATTCAAAGTTATGGATCTCCCGCACTCCTCACATTTGATATGTACCTTAAACAGTGGAAATGGTCACAGAAATGCCCTGTAACAAAGAGGTTCCCTCTACAGCTATTCACTGGTTTTTGCTTTGAGCCTAGGCTTGAAATTGCTCCATAG 1218 0.4269 MAGDSSWISHLDDGARRETREFDSVLEFGEEVDTEGTAVSVNTVLPDELVERILAYLPVVSIFRASSVCKRWHEIVTSERFLWNPSNSLPQRPWYFMFTYSDEPTGFAYDPILRKWYGIELPFIETSSWFVVSSYGLVCFMDNDSRSKLCMCNPITKRCRRLEGPPGLKFSDYSALAMSVNKKSHSYTLAIVKSKQIPEDFVQWEISIHIYHSQKETWMTTSTEVLMGWRGGNESVICNGVLYFLVYSAGGVPSESRHALIAYNISNLTSQATLRRSFIAAPCSLTCGRLMNMKEKLVMVGGIGKLDRPDIIKGIGIWVLNDSKWEEIVRMPHKYFQGFGEFDDVFASSGTDDQIYIQSYGSPALLTFDMYLKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00659 405 SUPERFAMILY F-box domain 43 144 IPR036047 GO:0005515
Phco1g00659 405 Pfam F-box-like 45 84 IPR001810 GO:0005515
Phco1g00659 405 Gene3D - 37 85 - -
Phco1g00659 405 PANTHER F-BOX FAMILY PROTEIN 22 402 IPR045048 -
Phco1g00659 405 FunFam F-box/kelch-repeat protein At3g61590 38 85 - -
Phco1g00659 405 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
Phco1g00659 405 NCBIfam F-box protein interaction domain 135 335 IPR017451 -
Phco1g00659 405 SUPERFAMILY Galactose oxidase, central domain 106 383 IPR011043 -
Phco1g00659 405 CDD F-box_AtFBW1-like 44 81 - -
Phco1g00659 405 FunFam F-box/kelch-repeat protein At3g61590 family 91 389 - -
Phco1g00659 405 SMART fbox_2 45 85 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00659 Phco-Chr1 6028361 6029578 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00659 1 6028361 6029578 Phco1g00659 1 6028361 6029578 ECH
Phco11g01271 11 9546887 9548101 Phco1g00659 1 6028361 6029578 PCT