Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00997 ATGGCTGATGAAACATCATGGATCAGCCACTATGATGATTACACAAGAAAGGAGACTCAGGACATTGATTCGTTATCTGAACCGGGCGACGAAGTTGATAAAGATGAGACTGTTATTTCCCTTGACATAATGACTGACGATTTATTGGACCGTATCCTAGCGTATCTCCCGGTTGAAAGCATTTTTAGAGCAAGCAGTGTGAGTAAAAGATGGTTTTCGATCGTTACTTCTGAAAGCTTTTCATGGAACCCTTCCAATTCGCCACCACAGAAGCCTTGGTACTTTATGTTTACCAGCTCTGATGAACCAACTGGTTGTGCTTATGATCCAAATCTTCGGAAATGGTATTGCTTTGAACTTCCCTTCATTGGATCTTCTAATTGGATAATTTCTTCATCGTATGGCTTAGTTTGCTTTATGGACAGCAGTCGTGTATTATACATGTGTAATCCTATTACCAAAAGATGCAAGAAGCTTCAAGAGCCTTCTGGGTTAAGATTTTCCGATTATGGTGCATTAGCAATGTCGGTAGACAAGGAATCACACAATTATATTGTGGCAATTGTGAAATCAAAGCAAGTTCCTGAAAACTTTTCCCAATGGGATATATCGATTCATATTTACAAATCAGAGGAGGAAACCTGGGCGACACCGCTAACTGAGGTTTTGATGGGGTGGAGAGGTGGAGAAGAGAGTGTGATATGCAATGGTGTGCTGTATTTTCTAGTTTACTTCACCGGTGGTGTTCCTTCAGAAAGCCGTCACGCGTTAGTCGCATTTAATATTTCTGGCCGTTCTTCTCAAGCTAGCTTGAGAAGGAGCTTTATTTCTGTACCTTGTTCTCTAACATGTGGCCGTCTAATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGCAAACACGATCGACCAGACATAATCAAAGGAATCGGTATCTGGGTTCTTCATGATAGGAAGTGGGAAGAGATTGTCCGAATGCCGCACAAATACTTCCAAGGCTTTGGAGAGTTCGACGAGGTTTTCGCTAGCAGCGGAAAAGATGATCTAATATATATTCAAAGTTACGGATCTCCTGCACTTCTCACATTTGACATGAAGGTTAAACATTGGAAATGGTCGCAGAAATGTCCGGTAACAAAGAGGTTCCCTCTACAGCTTTTCTCTGGTTTTTGCTTTGAGCCTAGGCTTAAAATTGCTCCATAG 1209 0.416 MADETSWISHYDDYTRKETQDIDSLSEPGDEVDKDETVISLDIMTDDLLDRILAYLPVESIFRASSVSKRWFSIVTSESFSWNPSNSPPQKPWYFMFTSSDEPTGCAYDPNLRKWYCFELPFIGSSNWIISSSYGLVCFMDSSRVLYMCNPITKRCKKLQEPSGLRFSDYGALAMSVDKESHNYIVAIVKSKQVPENFSQWDISIHIYKSEEETWATPLTEVLMGWRGGEESVICNGVLYFLVYFTGGVPSESRHALVAFNISGRSSQASLRRSFISVPCSLTCGRLMNMKEKLVMVGGIGKHDRPDIIKGIGIWVLHDRKWEEIVRMPHKYFQGFGEFDEVFASSGKDDLIYIQSYGSPALLTFDMKVKHWKWSQKCPVTKRFPLQLFSGFCFEPRLKIAP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00997 402 SUPERFAMILY Galactose oxidase, central domain 106 379 IPR011043 -
Tsu08g00997 402 Pfam F-box domain 46 80 IPR001810 GO:0005515
Tsu08g00997 402 PANTHER F-BOX FAMILY PROTEIN 2 401 IPR045048 -
Tsu08g00997 402 SUPERFAMILY F-box domain 42 142 IPR036047 GO:0005515
Tsu08g00997 402 PANTHER OS02G0260200 PROTEIN 2 401 - -
Tsu08g00997 402 SMART fbox_2 44 84 IPR001810 GO:0005515
Tsu08g00997 402 Gene3D - 35 83 - -
Tsu08g00997 402 TIGRFAM F_box_assoc_1: F-box protein interaction domain 134 360 IPR017451 -
Tsu08g00997 402 ProSiteProfiles F-box domain profile. 38 85 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00997 Tsu-Chr8 10948000 10950960 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00997 - - gmx:100817678 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00997 08 10948000 10950960 Tsu08g00997 08 10948000 10950960 ECH