Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1009 ATGAAAGAGACACTGTTCTATACTATCAACTCTCTTATGGCGGGAGAAACATCGTGGATCAGCAATTTCAGTTATGCCCCTCGATGGGAGACTAGGGTGTACGATTCATTTTCGGAACTTGATGAGGAAAATGATAAAGAAGAATCTGGTGTTTCTATGGACGATCTTTTGCCTGATGAACTGTTGGAACGTATCATCGCCTATCTCCCTACTGCGAGCATTTTCAGAGCAGGCGGTGTGTGTAAAAGATGGCACGAGATTGTTGCTTCGAGGAGGTTTTTATGGAGTCTTTCCCATGTGATGCCACAGAAACCTTGGTACTTTATGTTTACCAACTGTGATCAACCAGCTGGTTATGCTTATGATCATGTCCTTCGCAAATGGCATGGCATTGAACTTCCCTGCATCGAAACTTCTAATTGGTTTGTTGCATCATCATATGGCTTAGTTTGCTTCATGGACAATGACAGTAGAACCAAATTGTTTATATGCAATCCTATTACCAAAAGGCGCAGAAGGCTCAAGCAGCCTCCAGGTTTGAAATTTTGCGATTACAGCGCATTAGCAATCTCAGTGAGCAGGGAATCCCACAGTTACAATGTGGCTTTTGTAAAATCAAAGCAAGTCCCTGATAACTTTTTCCAGTGGGACATCTCGATTCATATATACAGTTCAGAGAAAATGACATGGGAGACGACCTTAACAGAGGTTTTGATTGGGTGGAGAGGTGGTGATGAGAGTGTAATATGCAATGATGTGCTATACTTTTTAGTTTACTCAACTGGCAGTGGTCCACCAGGAAATCGTCATGCCCTAGTTGCATATAACATCGACAACCGATCTTCACAAGGTAACTTGAAAAGGAGCTTTATCGACATACCTTATTCTCTGACTTGCGGCCGTCTTATGAATCTGAATGAGAAGCTTGTAATGGTGGGAGGGATTGGCAAGCAAGTTCGACCTGACATAATAAAAGGAATCGGCATCTGGCTTCTAAATGACGGAAAGTGGGAAGAAATTGCTAAAATGCCCCATAAATACTTCCAAGGTTTCGGAGAGTTGGATGATGTTTTTGCTAGCAGTGGTGCAGATGATCTGATATATATCCAAAGTTATGGAGCTCCAGCACTTCTTATATTTAACATGAACATTAAACAATGGAAATGGTCACATAAATGCCCTGTACAGAAGAAGTTCCCACTGCAGCTTTTTACTGGTTTCTGCTTTGAGCCTAGGCTTGAAATTTCTCCATAA 1254 0.4179 MKETLFYTINSLMAGETSWISNFSYAPRWETRVYDSFSELDEENDKEESGVSMDDLLPDELLERIIAYLPTASIFRAGGVCKRWHEIVASRRFLWSLSHVMPQKPWYFMFTNCDQPAGYAYDHVLRKWHGIELPCIETSNWFVASSYGLVCFMDNDSRTKLFICNPITKRRRRLKQPPGLKFCDYSALAISVSRESHSYNVAFVKSKQVPDNFFQWDISIHIYSSEKMTWETTLTEVLIGWRGGDESVICNDVLYFLVYSTGSGPPGNRHALVAYNIDNRSSQGNLKRSFIDIPYSLTCGRLMNLNEKLVMVGGIGKQVRPDIIKGIGIWLLNDGKWEEIAKMPHKYFQGFGELDDVFASSGADDLIYIQSYGAPALLIFNMNIKQWKWSHKCPVQKKFPLQLFTGFCFEPRLEISP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1009 417 PANTHER BNAA09G39300D PROTEIN 9 417 - -
Lal6g1009 417 SUPERFAMILY Galactose oxidase, central domain 161 394 IPR011043 -
Lal6g1009 417 SMART fbox_2 57 97 IPR001810 GO:0005515
Lal6g1009 417 Gene3D - 46 97 - -
Lal6g1009 417 PANTHER F-BOX FAMILY PROTEIN 9 417 IPR045048 -
Lal6g1009 417 Pfam F-box-like 57 96 IPR001810 GO:0005515
Lal6g1009 417 SUPERFAMILY F-box domain 47 156 IPR036047 GO:0005515
Lal6g1009 417 ProSiteProfiles F-box domain profile. 57 98 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1009 Lal-Chr6 7208885 7211434 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1009 - - gmx:100817678 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1009 6 7208885 7211434 Lal6g1009 6 7208885 7211434 ECH
Lal6g1009 6 7208885 7211434 Lal18g0263 18 2184859 2187953 LSH
Lal5g0029 5 365930 370416 Lal6g1009 6 7208885 7211434 PCT
Lal18g0263 18 2184859 2187953 Lal6g1009 6 7208885 7211434 PCT
Lal6g1009 6 7208885 7211434 Lal5g0029 5 365930 370416 PCT
Lal6g1009 6 7208885 7211434 Lal18g0263 18 2184859 2187953 PCT