Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1271 ATGCTCAGGCCTTTCGACTTTGTCATGGCGGGAGACACGTCATGGATCAGTCACTACGAGGATGATGCTCGGAGGGAGACTAGGGAGTTTGATTCATTTTTGGAACTTGGTGAGGAAATTGACAAAGAAGGAACTGCTGTTTCTGTGGATGCAATTTTGCCTGATGAATTGTTGGAGCGTATCCTAGCCTATCTCCCCGTTGCAAGCATTTTCAGAGCAGGTTGTGTGTGTAAAAGATGGTATGAGATTGTTACTTCTGAAAGGTTTTTATGGAACCTTTCCCATTTGCTTCCACAGAAACCTTGGTACTTCATGTTTACTAGCTCTGATGAACCAACTGGTTATGCTTATGATCCCATCCTTCGGAAATGGTATAGCATTGAACTTCCGTGCATCGGAACTTCTAACTGGTTCATTGCTTCATCAAACGGTTTAGTTTGCTTCATGGACAATGACAGCAGAAGTGAATTATGCATGTGCAACCCTGTTACCAAAAGGTGCAGGAAGCTTGAAGAGCCACCGGGTTTGAAATTTTCTGATTACAGTGCATTAGCAATGTCTGTGAGCAGGGAATCCCACAGTTATACAGTGGCAATTGTGAAATCAAAACAAATCCCTGATAATTTTTTCCAGTGGGATATTGCAATTCATATATACAACTCAGAGAAAGAGACCTGGATGGCACCTTTAACAGAGGTTTTGGTGGGGTGGAGGGGTGGTGATGAGAGTGTAATATGCAATGGTATGCTTTACTTTTTGGTTTACTCAACTGGCGGTGGTCCACCAGAAAGTCGCCATGCACTAATTGCATATAATATCTCCAATCGTTCTTCTCAGGCTACCTTGAAAAGGAGCTTTATTTCTGTGCCTTGTTCACTAACATGTGGCCGTTTGATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGTAAACACCACAGACCCGGCATAATAAAAGGAATTGGTATTTGGGTTCTTAATGATATGAAATGGGAAGAGATTGTGCGAATGCCCCACAAATACTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCAGTGGTACAGATGATCTAATCTACATTCAAAGTTATGGATCTCCAGCACTTCTCACATTTGACATGAAACTTAAACAATGGAAATGGTCACAGAAATGCCCTGTAACAAAGAGGTTCCCTCTGCAGCTTTTCACCGGGTTTTGCTTTGAGCCTAGGCTTGAAATTGCTCCATAG 1242 0.4235 MLRPFDFVMAGDTSWISHYEDDARRETREFDSFLELGEEIDKEGTAVSVDAILPDELLERILAYLPVASIFRAGCVCKRWYEIVTSERFLWNLSHLLPQKPWYFMFTSSDEPTGYAYDPILRKWYSIELPCIGTSNWFIASSNGLVCFMDNDSRSELCMCNPVTKRCRKLEEPPGLKFSDYSALAMSVSRESHSYTVAIVKSKQIPDNFFQWDIAIHIYNSEKETWMAPLTEVLVGWRGGDESVICNGMLYFLVYSTGGGPPESRHALIAYNISNRSSQATLKRSFISVPCSLTCGRLMNMKEKLVMVGGIGKHHRPGIIKGIGIWVLNDMKWEEIVRMPHKYFQGFGEFDDVFASSGTDDLIYIQSYGSPALLTFDMKLKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1271 413 Gene3D - 45 93 - -
Apr10g1271 413 SUPERFAMILY Galactose oxidase, central domain 114 391 IPR011043 -
Apr10g1271 413 PANTHER F-BOX FAMILY PROTEIN 9 412 IPR045048 -
Apr10g1271 413 Gene3D - 98 399 IPR015915 GO:0005515
Apr10g1271 413 PANTHER OS02G0260200 PROTEIN 9 412 - -
Apr10g1271 413 SMART fbox_2 53 93 IPR001810 GO:0005515
Apr10g1271 413 Pfam F-box-like 53 92 IPR001810 GO:0005515
Apr10g1271 413 SUPERFAMILY F-box domain 52 152 IPR036047 GO:0005515
Apr10g1271 413 ProSiteProfiles F-box domain profile. 53 93 IPR001810 GO:0005515
Apr10g1271 413 TIGRFAM F_box_assoc_1: F-box protein interaction domain 142 350 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1271 Apr-Chr10 25067078 25070169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1271 - - gmx:100817678 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1271 10 25067078 25070169 Apr10g1271 10 25067078 25070169 ECH
Apr4g0888 4 7162554 7166321 Apr10g1271 10 25067078 25070169 PCT