Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1824 ATGGCGGGAGAAACATCATGGATCAGCGACTATGATGATGACACACAAAGTGAGACTAGAGACTTGGATTTATTTTTGGAACAAGGTGAGGAAGTTGATAATGAAGGAACTGCTGTTTCAATGGATATAATTTTGCCTGATGATCTGTTGGAGCGTATTCTAGCGTATCTCCCCATTGCAAGCATTTTCAGAGCAGGTTTTGTGTCTAAAAGATGGTATGAGATTGTTACTTCAGAAAGGTTTCTATGGAACCTTTCACGTATGCTACCACAGAAACCGTGGTACTTTATGTTCACTAACTCTGATGAACCAACTGGTTATGCTTATGATCCCCTCCTTCGGAAATGGTATGGAATTGAGCTTCCCTTCATTGAAACCTCTAATTGGTTCATTGCTTCATCATTTGGCTTAGTTTGCTTCATGGACAATGAAAGAAGAAATGTGTTATGCGTGTGCAACCCAATTACCAAATTCTGCAGGAAGCTTGAGGAGCCTCCAGGTTTGAAATTTCCTGATTACAGCTCATTAGCAATCTCAGTGAACAGGGAATCCCTCAGTTATACTGTGGCAATTGTAAAATCAAAGGAAGTCCCTGAAAACTTTTTCCAGTGGGATGTCTCAATTCATATATACAATTCAGCAAGGGAGACATGGGTGACTACTCGGAGAGAGGTTTTGATGGGGTGGAGAGGAGGTGATGAGAGTGTGATTTGCAATGGCGTTCTATACTTCTTAGTCTACTCAACTGGTGGTGGTCATCCGGAGATTCGCCATGCACTTGTTGCATATAATATCTCTGATCATTCATCCCAAGCTAGCTTGAGAAGGAGCTTTATTCCTGTACCGTGTTCTCTTACATGTGGCCGTCTGATGAATCTGAAGGAGAAGCTCGTGATGGTGGGAGGAATTGGTAAACATGACCGCCCTGACATAATTAAAGGAATTGGCATCTGGGTTCTTCATGATACGAAATGGGAAGAGATAGTAAGAATGCCAAATAAGTACTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCGGTGGCATAGATGATCTAATATATATTCAGAGTTACGGATCTCCTGCACTTCTCACATTTGACATGAGCATTAAACAATGGAAATGGTCACAGAAGTGCCCAGTAACTAAGAGGTTTCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCGAGGCTTGAAATTGCTCCATAG 1218 0.4179 MAGETSWISDYDDDTQSETRDLDLFLEQGEEVDNEGTAVSMDIILPDDLLERILAYLPIASIFRAGFVSKRWYEIVTSERFLWNLSRMLPQKPWYFMFTNSDEPTGYAYDPLLRKWYGIELPFIETSNWFIASSFGLVCFMDNERRNVLCVCNPITKFCRKLEEPPGLKFPDYSSLAISVNRESLSYTVAIVKSKEVPENFFQWDVSIHIYNSARETWVTTRREVLMGWRGGDESVICNGVLYFLVYSTGGGHPEIRHALVAYNISDHSSQASLRRSFIPVPCSLTCGRLMNLKEKLVMVGGIGKHDRPDIIKGIGIWVLHDTKWEEIVRMPNKYFQGFGEFDDVFASGGIDDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1824 405 ProSiteProfiles F-box domain profile. 45 85 IPR001810 GO:0005515
Lja3g1824 405 PANTHER F-BOX FAMILY PROTEIN 1 404 IPR045048 -
Lja3g1824 405 SMART fbox_2 45 85 IPR001810 GO:0005515
Lja3g1824 405 PANTHER OS02G0260200 PROTEIN 1 404 - -
Lja3g1824 405 SUPERFAMILY Galactose oxidase, central domain 109 383 IPR011043 -
Lja3g1824 405 SUPERFAMILY F-box domain 42 144 IPR036047 GO:0005515
Lja3g1824 405 Pfam F-box-like 45 84 IPR001810 GO:0005515
Lja3g1824 405 Gene3D - 37 85 - -
Lja3g1824 405 TIGRFAM F_box_assoc_1: F-box protein interaction domain 136 338 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1824 Lja-Chr3 20652398 20655533 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1824 - - lja:Lj3g3v2361130.1 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0124 1 1050169 1052444 Lja3g1824 3 20652398 20655533 PCT