Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0263 ATGACATGGGGTTCATCTTTCAATTCTAAAAATCTCTCCTTTAAAAGGTTGTTCCTTTCAACTCCTATGGCGGGAGAACCATCATGGATCAACCACAGCCACTATGACAATGCCACACCAAGGGAGACTGAGGAGTTTGATTCAATTTCAGAACTCGGCGAAGAAGATGACAAAGAAGCAACTGCTATTTCTGTAGACATAAATTTACCTGATGACTTGTTGGAACTCATCCTAGCTCGTCTTCCCATCGCTAGCATTTTGAGAGCTGGTTGGGTGTGTAAAAGATGGCACAGGATTGTTACTTCCAAGAGTTTTTTATGGAACATTTCACATGTTCCGCCACAGAAGCCTTGGTATTTTATGTTTACTAGCTCTGATGAACCAACCGGTTATGCGTATGATCCTGTCCTTCGGAAATGGTACAGACTAGAACTTCCATTCATCGGCACTTCTAATTGGTTCATTGCGTCATCGTGCGGTGTGGTTTGCTTCATGGACAATGACAGCAGAAGCGAATTATGTGTCTGCAACCCTATTACAAAAACCTGGAGGAAGCTCATGGAGCCACCAGGTTTGAAAATTTCTGATTATAGCGCATTAGCAATCTCTTTTTACAGGGAATCTCAGAGTTATACTGTAGCAATTGTGAAATCGAAACAAGTCCCTGGGAACTTTTTCCAGTGGGATATCTCGATTCATATATATGACTCCGAGAAAGTAACCTGGGGGACGTCTATAACCGAGGTTTTGACGGGTTGGAGAGGCGGTGATGAGAGTGTGATATGTAACGGGGTGTTATATTTTCTAGTTTACTCAACAGGGGGTGGTCTACCAGAAAATCGCCATGCTCTAATTGCACACAACGTGTCAAACCATTCTTCTCAAGCTCGCTTAGCGAGGAGCTTTATTGAAGTACCATGTTCTCTAACATGTGGCCGTCTGATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGACTCGGCAAACCGGACCGACCTGACATAATTAAAGGGATCGGTATCTGGATTCTAAATGGTAGAAAGTGGGAAGAGATTGCTAAAATGCCCCACAAGTTCTTCCAAGGCTTTGGAGAATTAGATGATGTTTTTGCAAGCCGTGGCGCCGACGATCTAATTTATATTCAGAGTTATGGAGCTCCAGCACTTCTGATTTTCGACATGAATCATAAACATTGGAAGTGGTCACAGAAATGCCCTGTCACAAAAAGGTTCCAATTGCAACTCTTCACTGGTTTTTGCTTTGAACCTAGGCTTGAAATTGCTCTATAG 1290 0.4295 MTWGSSFNSKNLSFKRLFLSTPMAGEPSWINHSHYDNATPRETEEFDSISELGEEDDKEATAISVDINLPDDLLELILARLPIASILRAGWVCKRWHRIVTSKSFLWNISHVPPQKPWYFMFTSSDEPTGYAYDPVLRKWYRLELPFIGTSNWFIASSCGVVCFMDNDSRSELCVCNPITKTWRKLMEPPGLKISDYSALAISFYRESQSYTVAIVKSKQVPGNFFQWDISIHIYDSEKVTWGTSITEVLTGWRGGDESVICNGVLYFLVYSTGGGLPENRHALIAHNVSNHSSQARLARSFIEVPCSLTCGRLMNMKEKLVMVGGLGKPDRPDIIKGIGIWILNGRKWEEIAKMPHKFFQGFGELDDVFASRGADDLIYIQSYGAPALLIFDMNHKHWKWSQKCPVTKRFQLQLFTGFCFEPRLEIAL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0263 429 TIGRFAM F_box_assoc_1: F-box protein interaction domain 159 362 IPR017451 -
Lal18g0263 429 PANTHER BNAA09G39300D PROTEIN 15 428 - -
Lal18g0263 429 SMART fbox_2 69 109 IPR001810 GO:0005515
Lal18g0263 429 Gene3D - 59 109 - -
Lal18g0263 429 Pfam F-box-like 68 108 IPR001810 GO:0005515
Lal18g0263 429 SUPERFAMILY Galactose oxidase, central domain 130 405 IPR011043 -
Lal18g0263 429 PANTHER F-BOX FAMILY PROTEIN 15 428 IPR045048 -
Lal18g0263 429 ProSiteProfiles F-box domain profile. 63 110 IPR001810 GO:0005515
Lal18g0263 429 SUPERFAMILY F-box domain 68 168 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0263 Lal-Chr18 2184859 2187953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0263 - - lang:109339809 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0263 18 2184859 2187953 Lal18g0263 18 2184859 2187953 ECH
Lal5g0029 5 365930 370416 Lal18g0263 18 2184859 2187953 LSH
Lal6g1009 6 7208885 7211434 Lal18g0263 18 2184859 2187953 LSH
Lal5g0029 5 365930 370416 Lal18g0263 18 2184859 2187953 PCT
Lal18g0263 18 2184859 2187953 Lal6g1009 6 7208885 7211434 PCT
Lal18g0263 18 2184859 2187953 Lal18g0263 18 2184859 2187953 PCT
Lal6g1009 6 7208885 7211434 Lal18g0263 18 2184859 2187953 PCT
Lal18g0263 18 2184859 2187953 Lal5g0029 5 365930 370416 PCT