Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00182 ATGGCGGGAGACACATCATGGATAAGCCACTTGGATGATGGTGCTCGAAGGGAGACTAGGGAGTTTGATTCGATTTTGGAATTTGGTGAGGAAGTTGATAAAGAGGGAACTGCTGTTTCTATGAACACACTTTTACCTGATGAATTGCTGGAGCGAATCCTGGCCTATCTCCCTGTTGTAAGCATTTTCAGAGCAAGTTCTGTGTGTAAAAGATGGTATGAGATTGTTACTTCTGAAAGGTTTCAGTGGAACCCATCCAATTCACTGCCACAAAGACCTTGGTACTTTATGTTTACTTACTCAGATGAACCAACTGGTTTTGCTTATGATCCCATCCTTCGGAAATGGTATGGTGGCATTGAGCTTCCCTTCATCGAAACATCTAGTTGGTTCATTGTTTCATCTTATGGTTTAGTTTGTTTCATGGACAATGACAGCAGAAGCAAATTATGCATTTGCAACCCTATTACCAAAAGGTGCAGGAGGCTTGAGGATCCTCCGGGTTTGAAGTTTTCTGATTACAGTGCATTGGCATTGTCAGTGAACCGGAAATCCCACAGTTACACTCTGGCAATTGTGAAATCAAAACAAATCCCTGAGGATTTTGTGCAGTGGGAGATCTCAATTCATATATACCACTCACAGAAAGAGACCTGGATAACAACTTCAACAGAGGTTTTGATGGGGTGGAGAGGTGGTAATGAGAGTGTGATATGCAATGGTGTGTTATACTTTTTAGTTTACTCAGCTGGGGGTGTTCCTTCAGAAAGTAGACATGCATTGATTGCTTATAATATCTCCAATCTCACATCTCCTTCTACCCTGAGAAGGAACTTTATTGCTGCACCTTGTTCGCTAACATGTGGCCGTCTGATGAACATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGTAAGCAAGATCGACCTGATATAATAAAAGGAATTGGCATCTGGGTTCTTAACGATAGGAAATGGGAAGAGATTGTTCGAATGCCCCACAAATACTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGCAGTGGTACTGATGATCAAATATATATTCAAAGTTATGGATCTCCAGCACTCCTCACATTTGATATAAACCTTAAACAGTGGAAATGGTCACAGAAATGCCCTGTAACAAAGAGGTTCCCTCTACAGCTATTCACTGGCTTTTGCTTTGAGCCGAGGCTTGAAATTGCTCCATAG 1221 0.4185 MAGDTSWISHLDDGARRETREFDSILEFGEEVDKEGTAVSMNTLLPDELLERILAYLPVVSIFRASSVCKRWYEIVTSERFQWNPSNSLPQRPWYFMFTYSDEPTGFAYDPILRKWYGGIELPFIETSSWFIVSSYGLVCFMDNDSRSKLCICNPITKRCRRLEDPPGLKFSDYSALALSVNRKSHSYTLAIVKSKQIPEDFVQWEISIHIYHSQKETWITTSTEVLMGWRGGNESVICNGVLYFLVYSAGGVPSESRHALIAYNISNLTSPSTLRRNFIAAPCSLTCGRLMNMKEKLVMVGGIGKQDRPDIIKGIGIWVLNDRKWEEIVRMPHKYFQGFGEFDDVFASSGTDDQIYIQSYGSPALLTFDINLKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00182 406 PANTHER F-BOX FAMILY PROTEIN 25 403 IPR045048 -
Lapu10g00182 406 Gene3D - 36 84 - -
Lapu10g00182 406 CDD F-box_SF 45 77 - -
Lapu10g00182 406 NCBIfam F-box protein interaction domain 136 338 IPR017451 -
Lapu10g00182 406 SMART fbox_2 45 85 IPR001810 GO:0005515
Lapu10g00182 406 FunFam F-box/kelch-repeat protein At3g61590 38 85 - -
Lapu10g00182 406 FunFam F-box/kelch-repeat protein At3g61590 family 91 390 - -
Lapu10g00182 406 SUPERFAMILY Galactose oxidase, central domain 107 384 IPR011043 -
Lapu10g00182 406 Pfam F-box domain 45 81 IPR001810 GO:0005515
Lapu10g00182 406 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
Lapu10g00182 406 SUPERFAMILY F-box domain 40 145 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00182 Lapu-Chr10 3671108 3674252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00182 - - gmx:100817678 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00182 10 3671108 3674252 Lapu10g00182 10 3671108 3674252 ECH
Lapu6g01974 6 19544870 19549055 Lapu10g00182 10 3671108 3674252 PCT