Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01908 ATGGCGGGAGACACATCGTGGGTAAGCCACTCAGATGATGGTACACGAAGGGAGACTAGGGAGTTTGATTCAGTTTTGGAATTTGGTGAGGAAGTTGATAAAGAAGGAACTGCTATTTCTGTGAACACACTATTACCTGATGAACTGGTGGAGCGAATTCTTGCCTATCTCCCCGTTGTAAGCATTTTCAGAGCAAGCTCTGTGTGTAAAAGATGGTTTGAGATTGTTACATCTGATAGTTTTCAATGGAACCCTTCCAATTCACTGCCACAGAGACCTTGGTACTTTATGTTTACTAACTCGGATGAACCAACTGGTTATGCTTATGATCCCGTCCTTCGGAAATGGTATGGCATTGAGCTTCCCTTCATCGAAACATCTAGTTGGTTCATTGTTTCATCTTATGGTCTAGTTTGCTTTATGGACAATGACAGCAGAAGCAAATTATGCATGTGCAACCCTATTACCAAAAGGTGCAGGAGGCTTGAAGATCCTCCGGGTTTGAAATATTCTGATTACACTGCATTGGCAATGTCAGTGAACAGGAAATCCCATAGTTACATTTTGGCAATCGTGAAATCAAAACAAATCCCTGAGGATTTTGTCCAGTGGGAGATCTCGATACATTTATACCACTCACAGAAAGAGACCTGGATGACAAGTTTAACAGAGGTTTTAATGGGGTGGAGAGGTGGTAATGAGAGTGTGATATGCAATGGTGTGTTATACTTTTTAGTGTACTCAGCTGGAGGTGTTCCTTCTGAAAGTAGGCACGCACTCATTGCATATAATATCTCTAATCGCACTTCTCAAGCTACCTTGAGAAGGAGCTTTATTGCTGCACCTTGCTCACTAACATGTGGCAGATTGATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGTAAGCAGGATCGACCTGACATTATAAAAGGAATTGGCATATGGGTTCTTAATGACAGGAAGTGGGAAGAGATTGTTCGAATGCCCCCCAAATACTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGCAGCGGTACCGATGATCAAATATATATTCAAAGTTATGGATCTCCAGCACTCCTCACATTTGATATGAGCATTAAACAATGGAAATGGTCACAGAAATGCCCTGTAACAAAGAGGTTCCCTCTACAGCTATTCACTGGTTTTTGCTTTGAGCCTAGGCTTGAAATTGCTCCTTAG 1218 0.4195 MAGDTSWVSHSDDGTRRETREFDSVLEFGEEVDKEGTAISVNTLLPDELVERILAYLPVVSIFRASSVCKRWFEIVTSDSFQWNPSNSLPQRPWYFMFTNSDEPTGYAYDPVLRKWYGIELPFIETSSWFIVSSYGLVCFMDNDSRSKLCMCNPITKRCRRLEDPPGLKYSDYTALAMSVNRKSHSYILAIVKSKQIPEDFVQWEISIHLYHSQKETWMTSLTEVLMGWRGGNESVICNGVLYFLVYSAGGVPSESRHALIAYNISNRTSQATLRRSFIAAPCSLTCGRLMNMKEKLVMVGGIGKQDRPDIIKGIGIWVLNDRKWEEIVRMPPKYFQGFGEFDDVFASSGTDDQIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01908 405 PANTHER F-BOX FAMILY PROTEIN 6 402 IPR045048 -
Spst4g01908 405 CDD F-box_AtFBW1-like 45 81 - -
Spst4g01908 405 SUPERFAMILY Galactose oxidase, central domain 106 383 IPR011043 -
Spst4g01908 405 NCBIfam F-box protein interaction domain 135 335 IPR017451 -
Spst4g01908 405 SUPERFAMILY F-box domain 43 144 IPR036047 GO:0005515
Spst4g01908 405 FunFam F-box/kelch-repeat protein At3g61590 family 91 389 - -
Spst4g01908 405 Gene3D - 37 84 - -
Spst4g01908 405 SMART fbox_2 45 85 IPR001810 GO:0005515
Spst4g01908 405 FunFam F-box/kelch-repeat protein At3g61590 38 85 - -
Spst4g01908 405 Pfam F-box domain 45 81 IPR001810 GO:0005515
Spst4g01908 405 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01908 Spst-Chr4 59743581 59744798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01908 - - gmx:100817678 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01908 4 59743581 59744798 Spst4g01908 4 59743581 59744798 ECH
Spst6g00539 6 4952051 4953265 Spst4g01908 4 59743581 59744798 PCT