Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01084 ATGTTCATACCCTTTTTCACAGTGACACTACTTGAACAAGGTCTTTCAAACAAGAAGGCCTTTACATATGATTCTATAATGGCTGATGAAACATCATGGATCAGCCACTATGATGATGACACAAGAAAGGAGACTCAGGACATTGATTCGTTATCGGAACCGGGGGAGGAAGTTGATAAAGATGGGACTGTTATTTCACTTGATATAATGACTGACGATTTATTGGACCGTATCCTAGCGTATCTCCCGGTTGAAAGCATTTTCAGAGCAAGCAGTGTGAGTAAAAGATGGTTTTCGATTGTTACTTCTGAAAGCTTTTCATGGAACCCTTCCAATTCGCCACCACAGAAGCCTTGGTACTTTATGTTTACCAGCTCCGATGAACCAACTGGTTGTGCTTATGATCCGAACCTTCGGAAATGCAATCGCACATTATACATGTGCAATCCTATTACTAAAAGATGCAAGAAGCTTCAAGAGCCTTCTGGGTTAAGATTTTCTGATTATGGTGCATTAGCAATGTCGGTAGACAAGGAATCCCACGGTTATATCGTGGCAATTGTGAAATCAAAGCAAGTTCCTGAAAACTTTTCCCAATGGGATATCTCGATCCATATTTACAAATCAGAGGAGGAAACCTGGGCGACGCCACTAACTGAGGTTTTGATCGGGTGGAGAGGTGGAGAGGAGAGTGTGATATGCAATGGTGTGCTGTATTTTCTAGTTTACTTCACCGGTGGTGTTCCTTCAGAAAGCCGTCACGCGCTAGTTGCATATAATATTTCTGGCCGTTCTTCTCAAGCTAGCTTGAGAAGGAGCTTTATTTCTGTACCTTGTTCTCTAACATGCGGCCGTCTAATGAATATGAAGGAGAAGCTTGTAATGGTGGGAGGAATTGGCAAACATGATCGACCAGACATAATCAAAGGAATCGGTATCTGGGTTCTTCATGATAGGAAGTGGGAAGAGATTGTCCGAATGCCACACAAATACTTCCAAGGCTTTGGAGAGTTTGATGAAGTTTTCGCTAGCAGCGGTAAAGATGATCTAATATATATTCAAAGTTATGGATCTCCTGCACTTCTCACATTTGACATGAAGGTTAAACAATGGAAATGGTCGCAGAAATGTCCGGTAACAAAGAGGTTCCCTCTACAGCTTTTCTCTGGTTTTTGCTTTGAGCCTAGGCTTAAAATTGCTCCATAG 1206 0.4196 MFIPFFTVTLLEQGLSNKKAFTYDSIMADETSWISHYDDDTRKETQDIDSLSEPGEEVDKDGTVISLDIMTDDLLDRILAYLPVESIFRASSVSKRWFSIVTSESFSWNPSNSPPQKPWYFMFTSSDEPTGCAYDPNLRKCNRTLYMCNPITKRCKKLQEPSGLRFSDYGALAMSVDKESHGYIVAIVKSKQVPENFSQWDISIHIYKSEEETWATPLTEVLIGWRGGEESVICNGVLYFLVYFTGGVPSESRHALVAYNISGRSSQASLRRSFISVPCSLTCGRLMNMKEKLVMVGGIGKHDRPDIIKGIGIWVLHDRKWEEIVRMPHKYFQGFGEFDEVFASSGKDDLIYIQSYGSPALLTFDMKVKQWKWSQKCPVTKRFPLQLFSGFCFEPRLKIAP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01084 401 SUPERFAMILY Galactose oxidase, central domain 119 379 IPR011043 -
Trre15g01084 401 SUPERFAMILY F-box domain 68 152 IPR036047 GO:0005515
Trre15g01084 401 NCBIfam F-box protein interaction domain 143 359 IPR017451 -
Trre15g01084 401 ProSiteProfiles F-box domain profile. 64 111 IPR001810 GO:0005515
Trre15g01084 401 SMART fbox_2 70 110 IPR001810 GO:0005515
Trre15g01084 401 Pfam F-box domain 72 106 IPR001810 GO:0005515
Trre15g01084 401 FunFam F-box/kelch-repeat protein At3g61590 64 110 - -
Trre15g01084 401 PANTHER F-BOX FAMILY PROTEIN 32 140 IPR045048 -
Trre15g01084 401 Gene3D - 63 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01084 Trre-Chr15 8396630 8399671 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01084 - - gmx:100817678 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01084 15 8396630 8399671 Trre15g01084 15 8396630 8399671 ECH