Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00191 ATGGCGGGAGACACATCATGGATAAGCCACTTAGATGATGGTGCACGTAGGGAGACTAGGGAGTTTGATTCAGTTTTGGAATTTGGTGAGGAAGTTGACACAGAGGGAAGTGCTGTTTCTGTGAACACAGTGTTACCTGATGAATTGGTGGAGCGAATCCTAGCCTATCTCCCCGTTGTAAGCATTTTCAGAGCAAGTTCTGTGTGTAAAAGATGGCATGAGATTATTACTTCTGAAAGGTTTCAATGGAACCCTTCAAATTCATTGCCTCAGAGACCTTGGTACTTTATGTTCACCTATTCAGATGAACCAACTGGTTATGCTTATGATCCCATTCTTCGGAAATGGTATGGCATTGAGCTTCCTTTCATCGAAACATCTAGTTGGTTCGTTGTTTCTTCTTATGGTTTAGTCTGCTTCATGGACAATGACAGCAGAAGCAAATTATGCATGTGCAACCCTATTACCAAAAGGTGCAGAAGGCTTGAAGGTCCTCCCGGTCTGAAATTTTCTGATTACAGTGCATTGGCAATGTCAGTGAACAGGAAATCCCACAGTTACACTCTGGCAATTGTGAAATCAAAACAAATCCCTGAGGATTTTGTTCAGTGGGAGATCTCAATTCATATATACCGCTCAGAGAAAGAGACCTGGATGACAACTGCAACAGAGGTTTTGATGGGGTGGAGAGGTGGTAATGAGAGTGTGATATGCAATGGTGTGTTATACTTTTTAGTCTACTTAGCTGGGGGTGTTCCTTCAGAAAGTAGGCATGCACTGATTGCATATAATATTTCTAATCTCACTTCTCAACCTACCTTGAGAAGGAGTTTTATTGCTGCACCCTGTTCACTAACATGTGGCCGATTGATGAATATGAAGGAAAAACTTGTAATGGTGGGAGGAATTGGTAAGCCGGATAGACCTGACATAATAAAAGGAATTGGCATATGGGTTCTTAATGATAGGAAGTGGGAAGAGATTGTACGAATGCCCCATAGATACTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGCAGTGGTACTGGTGATCAAATATATATCCAAAGTTATGGATCTCCAGCACTCCTCACATTTGATTTGAACCTCAAACAATGGAAATGGTCACAGAAATGCCCTGTATCAAAGAGGTTCCCTCTACAGCTATTCACTGGATTTTGCTTTGAGCCTAGGCTTGAAATTGCTCCATAG 1218 0.4187 MAGDTSWISHLDDGARRETREFDSVLEFGEEVDTEGSAVSVNTVLPDELVERILAYLPVVSIFRASSVCKRWHEIITSERFQWNPSNSLPQRPWYFMFTYSDEPTGYAYDPILRKWYGIELPFIETSSWFVVSSYGLVCFMDNDSRSKLCMCNPITKRCRRLEGPPGLKFSDYSALAMSVNRKSHSYTLAIVKSKQIPEDFVQWEISIHIYRSEKETWMTTATEVLMGWRGGNESVICNGVLYFLVYLAGGVPSESRHALIAYNISNLTSQPTLRRSFIAAPCSLTCGRLMNMKEKLVMVGGIGKPDRPDIIKGIGIWVLNDRKWEEIVRMPHRYFQGFGEFDDVFASSGTGDQIYIQSYGSPALLTFDLNLKQWKWSQKCPVSKRFPLQLFTGFCFEPRLEIAP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00191 405 PANTHER F-BOX FAMILY PROTEIN 20 402 IPR045048 -
Vimu9g00191 405 FunFam F-box/kelch-repeat protein At3g61590 38 85 - -
Vimu9g00191 405 SMART fbox_2 45 85 IPR001810 GO:0005515
Vimu9g00191 405 FunFam F-box/kelch-repeat protein At3g61590 family 91 389 - -
Vimu9g00191 405 SUPERFAMILY F-box domain 43 144 IPR036047 GO:0005515
Vimu9g00191 405 NCBIfam F-box protein interaction domain 135 335 IPR017451 -
Vimu9g00191 405 SUPERFAMILY Galactose oxidase, central domain 83 384 IPR011043 -
Vimu9g00191 405 CDD F-box_AtFBW1-like 44 81 - -
Vimu9g00191 405 Gene3D - 86 387 IPR015915 GO:0005515
Vimu9g00191 405 Gene3D - 36 84 - -
Vimu9g00191 405 Pfam F-box domain 45 81 IPR001810 GO:0005515
Vimu9g00191 405 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00191 Vimu-Chr9 2410058 2411275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00191 - - gmx:100817678 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00191 9 2410058 2411275 Vimu9g00191 9 2410058 2411275 ECH
Vimu2g01592 2 11207795 11208724 Vimu9g00191 9 2410058 2411275 PCT