Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2268 . . . . . . . . . . . . . Bach2g01339 . Bva06g00404 Car01g01339 . . Dod03g1654 . . . . Gso15g1548 . . Lal21g1161 . . . Lan3g0946 . Lasa1g04499 . . . . . . . . . . Phac9g03645 Phco7g02603 . Psa1g0403 Pste2g01120 . . . . Ssu1g1689 . . . Tsu08g02483 . . Vimu10g00551 . . .
Pvu9g2269 . . . Aed4g1043 . Ahy13g2445 Ahy3g2141 Aip03g02753 . . . Apr1g2479 . . . . . Cca08g01291 . . . . Gma15g01783 . . . . . Lal4g1454 . Lan14g0077 . Lapu9g00324 Lasa1g04504 . . . . Lja6g1927 Mal4g2806 Mepo6g01989 . . Mtr2g1746 . Phco7g02604 . . . Pumo2g01853 Rops11g01936 Seca6g03621 Spst9g02751 . . . Trre3g02801 . Vian4g00423 Vifa1g04312 . Viun9g00585 . .
Pvu9g2270 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2271 . . . . . . . . . . . . . . . . . . . Dod03g1653 . . Gma15g01774 . Gso15g1546 . . Lal21g1162 . . . Lan3g0947 . . . . . . . . Mepo6g01988 . . Mtr2g1745 . . . . Pste2g01123 . . . . Ssu1g1688 . . Trre3g02798 Tsu08g02481 . . Vimu10g00549 . . .
Pvu9g2272 . . Adu03g02365 . . Ahy13g2444 Ahy3g2197 Aip03g02749 . . Amo03g1690 . Arst3g03165 . . . . . . . . . . . . . . . . . . . . . . . . . Lja6g1928 Mal4g2807 . . . . . Phco7g02605 . . . . . . . . . . . . . . . . Vivi4g01075 .
Pvu9g2273 . . . . Aev04g1962 . . . . . . Apr1g2477 . . . Bva06g00409 Car01g01337 Cca08g01294 . . . . Gma15g01773 . Gso15g1544 . Lal17g1454 . Lal4g1455 Lan15g0214 Lan14g0078 . . . . . . . Lja6g1930 Mal4g2808 . . . Mtr2g1744 Phac9g03648 . . Psa1g0401 . . . . . Ssu1g1686 . . . Tsu08g02480 . . . . . .
Pvu9g2274 . . . . . . . . . . . . . Bach2g01350 . Bva06g00415 . . . . . . Gma15g01769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2275 . . . . . . . . . . . Apr1g2476 . . . . . Cca08g01295 . . . . . . Gso15g1541 . . . . . . . . . . . . . . . . . . . . . . . . Pumo2g01850 Rops11g01932 Seca6g03627 Spst9g02753 Ssu1g1685 . . . . Vian4g00419 . Vimu10g00545 Viun9g00570 . .
Pvu9g2276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2277 . . . Aed4g1030 . . . . . . . Apr1g2475 . Bach2g01360 . Bva06g00429 . Cca08g01296 . . . . Gma15g01757 . Gso15g1538 Gso9g0670 . . . . . . Lapu9g00328 . . . . . Lja6g1931 . . . . . . Phco7g02608 . . Pste2g01130 Pumo2g01848 Rops11g01931 Seca6g03628 Spst9g02755 Ssu1g1684 . . . . Vian4g00418 . Vimu10g00544 Viun9g00567 . .
   
Previous Page 2358 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2268 Chr9 32601996 32605672 +
Bach Bach2g01339 Chr2 22810127 22812102 +
Bva Bva06g00404 Chr06 5100792 5102112 +
Car Car01g01339 Chr01 18928669 18932576 -
Dod Dod03g1654 Chr03 23106038 23111286 -
Gso Gso15g1548 Chr15 20475711 20479835 -
Lal Lal21g1161 Chr21 14252741 14257152 +
Lan Lan3g0946 Chr3 20670693 20675431 +
Lasa Lasa1g04499 Chr1 747577161 747579855 +
Phac Phac9g03645 Chr9 35616144 35619904 +
Phco Phco7g02603 Chr7 44925688 44928672 +
Psa Psa1g0403 Chr1 25047666 25050989 -
Pste Pste2g01120 Chr2 12186698 12189357 +
Ssu Ssu1g1689 Chr1 41214953 41218195 -
Tsu Tsu08g02483 Chr08 36934749 36938441 -
Vimu Vimu10g00551 Chr10 4518525 4521580 -
Pvu Pvu9g2269 Chr9 32612186 32614975 +
Aed Aed4g1043 Chr4 9658657 9663023 +
Ahy Ahy13g2445 Chr13 56941769 56945961 -
Ahy Ahy3g2141 Chr3 62917176 62921486 -
Aip Aip03g02753 Chr03 54331129 54335548 -
Apr Apr1g2479 Chr1 34390574 34394585 -
Cca Cca08g01291 Chr08 38861293 38864692 +
Gma Gma15g01783 Chr15 20452398 20455810 -
Lal Lal4g1454 Chr4 18720219 18726074 +
Lan Lan14g0077 Chr14 1082480 1087959 +
Lapu Lapu9g00324 Chr9 3297325 3301880 +
Lasa Lasa1g04504 Chr1 748010545 748013242 -
Lja Lja6g1927 Chr6 46980442 46983819 +
Mal Mal4g2806 Chr4 80353208 80356619 +
Mepo Mepo6g01989 Chr6 23363171 23367220 -
Mtr Mtr2g1746 Chr2 19988405 19992764 -
Phco Phco7g02604 Chr7 44931899 44935167 -
Pumo Pumo2g01853 Chr2 35065603 35070152 -
Rops Rops11g01936 Chr11 31260783 31274646 -
Seca Seca6g03621 Chr6 103496933 103500774 +
Spst Spst9g02751 Chr9 61732163 61735019 +
Trre Trre3g02801 Chr3 30494067 30497226 -
Vian Vian4g00423 Chr4 4863911 4866873 -
Vifa Vifa1g04312 Chr1 668841823 668844727 +
Viun Viun9g00585 Chr9 4304538 4308092 -
Pvu Pvu9g2270 Chr9 32615618 32616394 +
Pvu Pvu9g2271 Chr9 32626113 32628617 -
Dod Dod03g1653 Chr03 23077417 23081910 +
Gma Gma15g01774 Chr15 19924058 19927544 +
Gso Gso15g1546 Chr15 19630677 19636989 +
Lal Lal21g1162 Chr21 14257960 14264915 -
Lan Lan3g0947 Chr3 20676675 20682991 -
Mepo Mepo6g01988 Chr6 23353894 23360198 +
Mtr Mtr2g1745 Chr2 19979213 19985470 +
Pste Pste2g01123 Chr2 12237365 12243601 -
Ssu Ssu1g1688 Chr1 41171966 41186067 +
Trre Trre3g02798 Chr3 30465913 30469794 +
Tsu Tsu08g02481 Chr08 36914950 36920848 +
Vimu Vimu10g00549 Chr10 4509895 4513100 +
Pvu Pvu9g2272 Chr9 32632961 32636825 -
Adu Adu03g02365 Chr03 57320345 57325965 +
Ahy Ahy13g2444 Chr13 56919587 56925142 +
Ahy Ahy3g2197 Chr3 70503420 70509202 -
Aip Aip03g02749 Chr03 54310363 54315797 +
Amo Amo03g1690 Chr03 47566788 47572857 -
Arst Arst3g03165 Chr3 57722905 57728306 +
Lja Lja6g1928 Chr6 46986240 46992987 -
Mal Mal4g2807 Chr4 80395393 80398724 -
Phco Phco7g02605 Chr7 44940643 44946651 -
Vivi Vivi4g01075 Chr4 32482963 32487882 -
Pvu Pvu9g2273 Chr9 32640345 32647796 -
Aev Aev04g1962 Chr04 16553685 16565708 -
Apr Apr1g2477 Chr1 34376363 34382013 +
Bva Bva06g00409 Chr06 5118681 5122870 -
Car Car01g01337 Chr01 18895662 18902854 +
Cca Cca08g01294 Chr08 38906485 38912200 -
Gma Gma15g01773 Chr15 19857827 19865705 +
Gso Gso15g1544 Chr15 19566545 19575698 +
Lal Lal17g1454 Chr17 15923629 15932121 -
Lal Lal4g1455 Chr4 18725801 18733040 -
Lan Lan15g0214 Chr15 2317940 2324474 +
Lan Lan14g0078 Chr14 1088998 1095379 -
Lja Lja6g1930 Chr6 47002240 47008892 -
Mal Mal4g2808 Chr4 80421670 80428707 -
Mtr Mtr2g1744 Chr2 19969721 19976164 +
Phac Phac9g03648 Chr9 35665407 35668622 -
Psa Psa1g0401 Chr1 25026716 25028192 +
Ssu Ssu1g1686 Chr1 41150268 41156434 +
Tsu Tsu08g02480 Chr08 36895898 36904168 +
Pvu Pvu9g2274 Chr9 32668074 32671456 -
Bach Bach2g01350 Chr2 22855756 22861946 -
Bva Bva06g00415 Chr06 5141256 5148160 -
Gma Gma15g01769 Chr15 19789268 19807347 +
Pvu Pvu9g2275 Chr9 32690595 32693137 -
Apr Apr1g2476 Chr1 34351299 34365922 +
Cca Cca08g01295 Chr08 38935715 38964693 -
Gso Gso15g1541 Chr15 19499130 19511392 +
Pumo Pumo2g01850 Chr2 34828632 34843858 +
Rops Rops11g01932 Chr11 31172901 31182107 +
Seca Seca6g03627 Chr6 103546067 103557275 -
Spst Spst9g02753 Chr9 61760468 61780662 -
Ssu Ssu1g1685 Chr1 41063418 41090366 +
Vian Vian4g00419 Chr4 4792221 4805096 +
Vimu Vimu10g00545 Chr10 4460519 4474075 +
Viun Viun9g00570 Chr9 4242005 4265199 +
Pvu Pvu9g2276 Chr9 32695714 32710890 -
Pvu Pvu9g2277 Chr9 32715092 32723105 +
Aed Aed4g1030 Chr4 9451840 9456868 -
Apr Apr1g2475 Chr1 34340023 34348909 -
Bach Bach2g01360 Chr2 22916848 22920042 -
Bva Bva06g00429 Chr06 5208899 5212726 +
Cca Cca08g01296 Chr08 38986018 38991678 +
Gma Gma15g01757 Chr15 19549490 19556802 +
Gso Gso15g1538 Chr15 19262055 19271102 +
Gso Gso9g0670 Chr9 8976117 8985186 +
Lapu Lapu9g00328 Chr9 3373879 3381591 +
Lja Lja6g1931 Chr6 47045261 47049244 +
Phco Phco7g02608 Chr7 45026395 45030046 +
Pste Pste2g01130 Chr2 12309764 12315450 +
Pumo Pumo2g01848 Chr2 34791735 34796630 -
Rops Rops11g01931 Chr11 31154704 31158934 -
Seca Seca6g03628 Chr6 103564556 103568438 +
Spst Spst9g02755 Chr9 61786995 61790697 +
Ssu Ssu1g1684 Chr1 41046941 41051324 -
Vian Vian4g00418 Chr4 4777908 4781095 -
Vimu Vimu10g00544 Chr10 4442429 4446555 -
Viun Viun9g00567 Chr9 4219222 4225439 -