Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00544 ATGTCAAACAAGTGTTTGTGCGACTCTACTCACTTCATTGCAATAATTGTTGTCAGTGTTCGTCATCAATGGCCACCTCATACTATCACTGATTGTGTTGTGTCTCATCTTCCACACAGAAAGGTGTTGCATAAATCCTCTGTCTTTTCTAGGTGGCAAGTTCCTGCTTCAACCACCATTTCTATTATTGACATTCACAAAAACACCACCATTCCACTGACACAGAGAACTCACATTTTCAGAACAAGAGCCATGAAACAAGGGTCACCAGCATCACCACCACTACCATCACCACCACAACCACCTCCACCAACAAAAAATGTGGTCAGGCTTCAGAGCAGTTTAACGCCATCAAGGTTAAGACTTCCTTCCAAGTACAGAGAGCCTCCAAGGACTCCACCAGAGGTTGTCAATGGAGTGGTGTCAACTCCAACTAGGAGAGCCCAGTCTGTCACTCCAGAGCTGAAGCACACTTCCAGGATCAAAAGGGGTCTAGTGCTGAACAAGGCCAAACCCAATGAAGAGGTCGTGGGAACCCACAGGGGTAGGGAAGCTGAAGAGGCTAAGGCTGTGTCTCGGTTCGTGCGGCCTCATGTTGTGGAACAGTTTGCTAGGCCAAGGAGTGCGGTTGGGGAATTTACTATGAAGAGGGATAAGGAGGACCCTGATGGAAAGAGTAAGAAGGAACTGATGGAGAAGCTTGAGGTGAGTGAGAGTTTGATCAAGAATCTGCAGTCTGAAGTTCTGGCTTTGAAGGCTGAGTTGGAAAAAGTTAAGGGCTTGAATGTGGAGCTGGAATCTCACAACAGAAAACTCACTAAGGATGTTGCTGCTGCTGAGTCGAAGGTGATGTCTTTGGGTGGAAGTGAAAAGATGAAGGAGCCAATTGCAGAACATCAGAGCCCCAAATTTAAACACATTCAGAAACTCATTGCTGACAAATTAGAAAGGTCCATAGTGAAAAAGGAAGCCATTACTGATGGCTGCTTTGTTAAAGCCTCCCCTCCAGCATCAACAGCAATTCCTACGATTCCTGAAGCTACAACTATAAGGGTAGGAAGAAAGCCTCCACTAAAAGCATGTCTGCCACCGCCTCCACCACCGATGCCACCATCAATCCCTTCTAGGCCTGTAGCAAAAGTAAATAACACCCAAAGGGCCCCTGCATTTGTGAAATTACTTCACTCATTGAACAGTCAAGAAGAAATGAAGAACACAACAGGATCGGTCAAACAGCAGAAACCAGTTGCTGTGAATGTACATAGCAGCATTGTTGGAGAAATTCAAAACCGTTCTGCTCATCTATTAGCAATAAGGGCAGACATTGAAACAAAAGGAAATTTTATCAATGACCTTATAAAAAAGGTGGTAGAAGCGGCCTACACAGACATTGAAGATGTCTTAAATTTTGTTAATTGGCTTGATGGTGAACTCTCATCATTGGCTGATGAGCGTGCAGTCTTGAAGCATTTTAATTGGCCTGAGAGAAAAGCTGATGCGATGCGTGAAGCCGCAGTTGAGTATCGGGAACTTAAATTGTTAGAACAAGAGATTTCCTCCTTCAAGGATGACCCTGAAATTCCATGTGGAGCTTCCTTGAGAAAGATGGCCACCCTATTAGATAACATACAGAAACTAATCAAGCTGAGAAATTCTGTAATGCGTTCATATCAAGATTACAAAATTCCAACCGCTTGGATGCTTGACTCGGGAATCACGGAAAAGATTAAGCAGGCTTCTATGATTCTGGTCAAAATGTACATGAAAAGAGTGACAATGGAACTTGGATCTGCTAGGAATTCTGACAGACAGTCTAGTCAAGAATCCCTTCTGCTTCAGGGCGTCCATTTTGCATATAGAGCTCATCAGTTTGCTGGAGGTTTGGATGCAGAAACTCTGTGTGCTTTTGAAGAGATAAGGCAACATGTGCCAGGACACTTAGCAGGGTCTCGAGAACTTTTGGCTGGCATAGCATCATCAAGAAATAAGAAGAAACATGCAGAGATTTTGAAGAAAAAACTTTCCATAGGGTGGTTGAGGAAGTTTAGTAGCTAA 2055 0.4394 MSNKCLCDSTHFIAIIVVSVRHQWPPHTITDCVVSHLPHRKVLHKSSVFSRWQVPASTTISIIDIHKNTTIPLTQRTHIFRTRAMKQGSPASPPLPSPPQPPPPTKNVVRLQSSLTPSRLRLPSKYREPPRTPPEVVNGVVSTPTRRAQSVTPELKHTSRIKRGLVLNKAKPNEEVVGTHRGREAEEAKAVSRFVRPHVVEQFARPRSAVGEFTMKRDKEDPDGKSKKELMEKLEVSESLIKNLQSEVLALKAELEKVKGLNVELESHNRKLTKDVAAAESKVMSLGGSEKMKEPIAEHQSPKFKHIQKLIADKLERSIVKKEAITDGCFVKASPPASTAIPTIPEATTIRVGRKPPLKACLPPPPPPMPPSIPSRPVAKVNNTQRAPAFVKLLHSLNSQEEMKNTTGSVKQQKPVAVNVHSSIVGEIQNRSAHLLAIRADIETKGNFINDLIKKVVEAAYTDIEDVLNFVNWLDGELSSLADERAVLKHFNWPERKADAMREAAVEYRELKLLEQEISSFKDDPEIPCGASLRKMATLLDNIQKLIKLRNSVMRSYQDYKIPTAWMLDSGITEKIKQASMILVKMYMKRVTMELGSARNSDRQSSQESLLLQGVHFAYRAHQFAGGLDAETLCAFEEIRQHVPGHLAGSRELLAGIASSRNKKKHAEILKKKLSIGWLRKFSS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00544 684 Coils Coil 497 517 - -
Vimu10g00544 684 MobiDBLite consensus disorder prediction 91 106 - -
Vimu10g00544 684 Coils Coil 227 282 - -
Vimu10g00544 684 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 88 645 IPR040265 -
Vimu10g00544 684 MobiDBLite consensus disorder prediction 85 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00544 Vimu-Chr10 4442429 4446555 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00544 - - gmx:100820086 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00544 10 4442429 4446555 Vimu10g00544 10 4442429 4446555 ECH
Vimu7g01612 7 15084827 15088494 Vimu10g00544 10 4442429 4446555 PCT