Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02481 ATGGCTCCAATACGCTCCACTGGATTTGTTGATCCTGGTTGGGATCATGGCATTGCTCAAGATGAGCGGAAAAAGAAGGTTAGATGTAATTACTGTGGGAAAATTGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAGTAACATACTGTGAAAAGGCTCCTGAGGAAGTCTACCTAAAAATGAAGGAAAACCTGGAAGGGTGCCGTtctaataagaaacaaaagcGGGTTGATGCTCAAGCATACATGAATTTTCACtctaatgatgatgaagatgatgaagagcaAGTTGGGTGTAGAAGCAAAGGGAAGCAATTGATGGATGATAGGAATGTATCTGTAAATTCAACTCCTCTTCGGTCCTTAGGATATATTGACCCAGGATGGGAACATGGTGTTGCTCAggatgagagaaagaaaaaagtcaAATGCAGTTATTGTGAGAAAGTTGTTAGTGGAGGTATTAATAGGTTTAAACAACATTTAGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAGTGCTCCGGAAGAAGtttatcttaaaataaaagagaataTGAAATGGCATCGCACTGGAAAGCGACATAGGCAACCTGAGGCTAAGGATATGATGCCTTTCTATCCAAAGTCtgataatgaagatgatgaatatgAGCAAGCGGAAGATACTTTGCATCATATGAATAGAGAAGCTTTGATCGATATTGATAAGAGATACTCTAAAGATACGGTAAAGACCTTCAAGGGAATGTCTAATACTGGCCCAGAACCAGTGTTGAGAAGATCAAGATTAGATAGTTTTTACCTGACACTTCCCACGAATCAGACTCCTCAAacttacaaacaattaaaagtTAAGACGGGACCTACTAAGAAGTTACGCAAGCAAGTTATTTCTTCCATTTGCAAGTTCTTTTGCCATGCAGGAATTCCTTTACAGGCCACAGACtccaaatattttcataaaatgctGGAAATGGTTGGCCAATATGGACAAGGACTGGTATGCCCACCCAGCCAAGTTATTTCTGGTCGCTATTTGCAGGATGAAATCAATTCCATTAAGAATTACCTTATTGAATATAAGGCTTCCTGGGCAATCACTGGTTGTTCTATAATGACTGATAGTTGGAGAGATGCACAGGGTAGGACAATTATTAACTTTCTTGTTTCATCTCCTCATGGCATATACTTTGCTTCTTCAGTTGATGCCACTAATGTGGTAGAAGATGCACCAAATTTATTTAAGCTTCTTGACAAAGTAGTGGAAGAAATAGGTGAGGAAAATGTAGTACAGGTAATCACTGAAAATACTCCCAACTATAAAGCTGCGGGGAAAATGCTTGAAGAGAGGAGAAGGAATTTATTCTGGACGCCTTGTGCTACCTCTTGTATTAGTCAGGTGCTTGAAGATTTTATGAAGATAAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAACTAATATACAATCAAATATGGTTGTTAAATCTTATGAAAACTGAATTTACCCAGGGGAAGGATCTTCTAAAGCCAGCTGGCACCCAGTGTGCCTCTAGCTTTGCTACATTGCAGAGCTTGTTGGATCATCGAGTTAGTCTTAGACGAATGTTTCTTTCAAACAAATGGATGTCATCCAGGTTCTCCAGCTCAAGCGAGGGGAAAGAGGTGCAAAAAATTGTTCTGAATGTCACATTTTGGAAGAAAATGCAGTATGTGAGTAAGTCAGTAGATCCCATATTTCAAGTGCTTCAAAAGGTGTCTAGCGGTGAGAGCTTGTCAATGCCGTATATATATAACGACTTGTACAGGGCAAAACTTGCAATCAAATCTGTTCATGGCGATGATGCACGGAAATATGAACCTTTCTGGAAGGTCATAGACAGGCATTGTAACTCTCTCTTATGTCATCCTCTTTACTTGGCCGCTTACTTCTTGAATCCATCATACCGATATCGTCAGGATTTTGTTGCGCATTCTGAGGTAGTGCGAGGGCTGAATGAATGCATTGTTCGGCTAGAGCTAGATAATATGAGACGAATATCTGCATCAATGCAAATTGCTCATTATAATTCTGCACAAGATGACTTCGGAACTGAATTGGCAATTAGCACAAGAACAGGTCTTGAACCAGCTGCTTGGTGGCAACAACACGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCTGTTCGCATATTAAGTCAGACGTGCTCATCGTTGGCATGTGAGCATGATTGGAGTATGTATGATCAGTTATATAGCAAAAGACAAAATCGTCTATCTCAGAAGAAACTAAACGATATCATGTATGTTCACTACAACTTGCGACTTAGAGAATACCAGGTAAGAAAAAGGTCCAGGGAGTCAAAGTCTACCTCTGTTGACAGTGTTCTACTAGAGCATTTGCTCGGTGACTGGATAGTTGATACCACTATACAAGGCTATCATGGTGACAAGAATATCCCTTTTGGAGTTGAACTAGACGATGAATATGAAAACGATTCAGTTGATTACGAAAATGGACATGCAAGGCTTCTAAAGGGTTCCCATGAGCAGGTTACTATGGCTGATGGAGCAGCAGGATCATCAGATGCAGATCATGCGAACATTGATGGTGCTACTGATGATGATTCCGACCTGAATTATTTTGATGATGACTTGAGCGACTAA 2703 0.3844 MAPIRSTGFVDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLEGCRSNKKQKRVDAQAYMNFHSNDDEDDEEQVGCRSKGKQLMDDRNVSVNSTPLRSLGYIDPGWEHGVAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEVYLKIKENMKWHRTGKRHRQPEAKDMMPFYPKSDNEDDEYEQAEDTLHHMNREALIDIDKRYSKDTVKTFKGMSNTGPEPVLRRSRLDSFYLTLPTNQTPQTYKQLKVKTGPTKKLRKQVISSICKFFCHAGIPLQATDSKYFHKMLEMVGQYGQGLVCPPSQVISGRYLQDEINSIKNYLIEYKASWAITGCSIMTDSWRDAQGRTIINFLVSSPHGIYFASSVDATNVVEDAPNLFKLLDKVVEEIGEENVVQVITENTPNYKAAGKMLEERRRNLFWTPCATSCISQVLEDFMKIRCVEECMEKGQKITKLIYNQIWLLNLMKTEFTQGKDLLKPAGTQCASSFATLQSLLDHRVSLRRMFLSNKWMSSRFSSSSEGKEVQKIVLNVTFWKKMQYVSKSVDPIFQVLQKVSSGESLSMPYIYNDLYRAKLAIKSVHGDDARKYEPFWKVIDRHCNSLLCHPLYLAAYFLNPSYRYRQDFVAHSEVVRGLNECIVRLELDNMRRISASMQIAHYNSAQDDFGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSLACEHDWSMYDQLYSKRQNRLSQKKLNDIMYVHYNLRLREYQVRKRSRESKSTSVDSVLLEHLLGDWIVDTTIQGYHGDKNIPFGVELDDEYENDSVDYENGHARLLKGSHEQVTMADGAAGSSDADHANIDGATDDDSDLNYFDDDLSD 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02481 900 Pfam hAT family C-terminal dimerisation region 715 786 IPR008906 GO:0046983
Tsu08g02481 900 SUPERFAMILY Ribonuclease H-like 370 789 IPR012337 -
Tsu08g02481 900 Coils Coil 218 238 - -
Tsu08g02481 900 ProSiteProfiles Zinc finger BED-type profile. 8 64 IPR003656 GO:0003677
Tsu08g02481 900 ProSiteProfiles Zinc finger BED-type profile. 130 186 IPR003656 GO:0003677
Tsu08g02481 900 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 44 841 - -
Tsu08g02481 900 Pfam BED zinc finger 136 171 IPR003656 GO:0003677
Tsu08g02481 900 Pfam BED zinc finger 14 49 IPR003656 GO:0003677
Tsu08g02481 900 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 11 48 - -
Tsu08g02481 900 PANTHER OSJNBA0013A04.12 PROTEIN 11 48 - -
Tsu08g02481 900 PANTHER OSJNBA0013A04.12 PROTEIN 44 841 - -
Tsu08g02481 900 MobiDBLite consensus disorder prediction 869 900 - -
Tsu08g02481 900 Pfam Protein of unknown function (DUF 659) 345 496 IPR007021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02481 Tsu-Chr8 36914950 36920848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02481 - - gmx:100814604 1569.67