Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01339 ATGGCTGCAAAGAAAGCCATTGAAACATTCTCCAAGAGCTTGATTGAAGATGTTCATAAATGGGGTTGTTTTAAACAAACAGGTGTGAGTTTAAGGTACATGATGGAATTTGGTTCAAAACCAACTGACAAGAATTTGTTGATTTCTGCACAGTTCCTTCAGAAGGAACTTGCTATTAGGATTGCTAGAAGAGCTATTGAACTTGAAAGTCTTCCTTGTGGATTATCACTAAAACCTGCTGTTTTGAAGGTTAGGGATTGGTACGTGGATTCCTTCCGCGATATTAGATCATTCTCCGAGATCAAGAATATGAATGATGAAAAAGAGTTCACTGAAGTGATCAAGGCCATAAAAGTTAGACACAACAATGTGGTACCTACAATGGCCTTAGGTGTTCAGCAATTGAAGAAGGATATGGATCCAAAGATTGTTAATCAAGATGTTGTTGAGATTCATCAGTTCCTCGATCGCTTTTACCTGTCAAGAATCGGAATCCGCATGCTCATAGGGCAGCATGTTGAGTTGCACAATCCAAATCCTCTACCTCACGTCGTAGGCTATATACATACAAAAATGTCTCCGGTGGAGGTGGCGAGGAATGCTAGCGAGGACGCACGCGCTATATGTTGTCGCGAATATGGAAGTGCCCCTGATATTCATATTTATGGCGATCCTGATTTTACTTTTCCATATGTTTCAGCTCATTTGCATCTTATGGTATTCGAGTTGGTTAAGAACTCGCTGCGTGCTGTCGAAGAGCGTTATATGAATTCTGACAAAGTTTCGCCTCCCATACGAATAATAGTTGCTGATGGATTAGAGGATGTTACCATTAAGATATCAGATGAGGGAGGTGGAATACCAAGAAGTGGCCTGCCAAAGATTTTTACATATCTGTATAGTACTGCAAGAAATCCGTTGAATGAGCATGAAGATCTTGGAGTAGCTGATAATGTGACAATGGCGGGATATGGATATGGCCTTCCTATTAGTCGTCTATATGCTCGGTATTTTGGAGGCGATCTTCAAATAATCTCTATGGAAGGATATGGGACTGATGCATATCTACATCTATCTCGTTTGGGAGATTCACAAGAACCTTTGCCTTGA 1110 0.4072 MAAKKAIETFSKSLIEDVHKWGCFKQTGVSLRYMMEFGSKPTDKNLLISAQFLQKELAIRIARRAIELESLPCGLSLKPAVLKVRDWYVDSFRDIRSFSEIKNMNDEKEFTEVIKAIKVRHNNVVPTMALGVQQLKKDMDPKIVNQDVVEIHQFLDRFYLSRIGIRMLIGQHVELHNPNPLPHVVGYIHTKMSPVEVARNASEDARAICCREYGSAPDIHIYGDPDFTFPYVSAHLHLMVFELVKNSLRAVEERYMNSDKVSPPIRIIVADGLEDVTIKISDEGGGIPRSGLPKIFTYLYSTARNPLNEHEDLGVADNVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01339 369 SMART HKATPase_4 231 362 IPR003594 -
Car01g01339 369 ProSiteProfiles Histidine kinase domain profile. 236 362 IPR005467 -
Car01g01339 369 Gene3D - 191 368 IPR036890 -
Car01g01339 369 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 189 IPR018955 -
Car01g01339 369 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 17 179 IPR036784 -
Car01g01339 369 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 233 359 IPR003594 -
Car01g01339 369 PANTHER BNAA05G30880D PROTEIN 10 369 - -
Car01g01339 369 PANTHER PYRUVATE DEHYDROGENASE KINASE 10 369 IPR039028 GO:0004672
Car01g01339 369 Gene3D - 4 182 IPR036784 -
Car01g01339 369 PRINTS Bacterial sensor protein C-terminal signature 276 290 IPR004358 GO:0016310|GO:0016772
Car01g01339 369 PRINTS Bacterial sensor protein C-terminal signature 322 340 IPR004358 GO:0016310|GO:0016772
Car01g01339 369 PRINTS Bacterial sensor protein C-terminal signature 346 359 IPR004358 GO:0016310|GO:0016772
Car01g01339 369 CDD HATPase_PDK-like 193 359 - -
Car01g01339 369 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 189 358 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01339 Car-Chr1 18928669 18932576 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01339 K00898 - gmx:100785344 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01339 01 18928669 18932576 Car01g01339 01 18928669 18932576 ECH