Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1684 ATGAAGCAAGAGTCACcagcatcaccaccaccaccaccaacaacaaaaAGTGTGATCAAGCTTCAGAACAGTTTAACTCCATCACGGTTCAGACCTTCTTCCAAGTCCAAAGAGCCTCCAAAGACTCCACCAGAGGCTGTCAATGGGATGGTGTCAATATCATCAAGGAGAGCCAAGTCTGTGACTCCAGAGTTGAAGCACAATTCAAGGATCAAAAGTGGTCTCGTGATGAACAAGGCCAAACCCAATGAAGAGGTTGTGGGAACCCAAAGGGGTAGGGAAGCTGAAGAGGCTAAGGTTGTGGCGCGTTTTGTGAGTCGGCATGTTGTGGAACAGTTTGCTAGACCAAGGAGTGGGGTTGGGGATTTTGCTTTGAAGAGGGATAAGGAGGACCCTGATAGGAAGAGTAAGAAGGAATTAATGGAGAAGCTTGAGGTGAGTGAGAGTTTGATCAAGAATCTGCAGTCTGAAGTGCTGGCTTTAAAGGCTGAGTTGGATAAAGTTAAGGGTTTGAATGTGGAGCTGGAGTCTCACAACAGGAAACTCAATGAGGATCTTGCTGCTGCTGAAGCTAAGGTGGTGTCTTTGGGCGGCAGTGGTAAGGAGCCAAATGGAGACCATCAGAGCCCCAAGTTTAAACACATTCAGAAACTCATTGCCGACAAATTGGAACGGTCCATAGTGAAAAAGGAAGCCATTACTGATGGATGCTTTGTTAAAGCACCAATTCCAGCACCAACAGCAACTCTTGCCATTCCTGATGCTACAACTACAAGGATAGGAAGAAAACCTACACCCAAGTCATGCCGACTgccaccgccaccgccaccaccgaTGCCACCTTCAATCCCTTCTAGGCCTATAGCAAAAGCAAATAACAACCAAAGGGCTCCTGCATTTGTGAAATTATTTCACTCATTAAAGAATCAAGAAGGGATGAAAAGCACAACAGGATCAGTTAAACAGCAGAAACCAGTTGCTGTCAATGTACACAGCAGCATTGTTGGAGAAATTCAAAACCGTTCTGTTCATCTTTTAGCAATAAGGGCAGACATTGAAACAAAAGGAGAGTTCATTAATGACCTTATAAAAAAGGTGGTAGAAGCAGCCTACACAGATATTGAAGATgtcttaaattttgttaattggcTTGATGGTGAACTCTCATCATTGGTTGATGAGCGTGCAGTTTTGAAGCATTTTAATTGGCCTGAGAGGAAAGCCGATGCCATGCGTGAAGCTGCAGTTGAGTTTCGTGAACTTAAATTGTTAGAACAAGAGATTTCCTCCTTCAAGGATGACCCAGAAATTCCATGTGGTGCTTCGTTGAGAAAGATGGCCAGCCTATTAGACAAGTCTGAGGGCAGCATACAGAGGCTAATCAAGTTGCGAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTGCCTGGATGCTTGATTCAGGAATCATGACCAAGATAAAGCAGGCTTCTATGGTTCTGGTCAAGATGTACATGAAAAGAGTGACAATGGAGCTTGGATCTGCTCGAAACTCAGCCAAACAGTCTAGTCAAGAATCCCTTCTTCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAGTTTGCTGGTGGTCTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATACGGCAACATGTGCCAGGACACTTGGCAGGGTCTCGAGAACTTTTGGCTAGCATAGCATCATCATGA 1725 0.4232 MKQESPASPPPPPTTKSVIKLQNSLTPSRFRPSSKSKEPPKTPPEAVNGMVSISSRRAKSVTPELKHNSRIKSGLVMNKAKPNEEVVGTQRGREAEEAKVVARFVSRHVVEQFARPRSGVGDFALKRDKEDPDRKSKKELMEKLEVSESLIKNLQSEVLALKAELDKVKGLNVELESHNRKLNEDLAAAEAKVVSLGGSGKEPNGDHQSPKFKHIQKLIADKLERSIVKKEAITDGCFVKAPIPAPTATLAIPDATTTRIGRKPTPKSCRLPPPPPPPMPPSIPSRPIAKANNNQRAPAFVKLFHSLKNQEGMKSTTGSVKQQKPVAVNVHSSIVGEIQNRSVHLLAIRADIETKGEFINDLIKKVVEAAYTDIEDVLNFVNWLDGELSSLVDERAVLKHFNWPERKADAMREAAVEFRELKLLEQEISSFKDDPEIPCGASLRKMASLLDKSEGSIQRLIKLRNSAMRSYQEYKIPTAWMLDSGIMTKIKQASMVLVKMYMKRVTMELGSARNSAKQSSQESLLLQGMHFAYRAHQFAGGLDAETLCAFEEIRQHVPGHLAGSRELLASIASS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1684 574 MobiDBLite consensus disorder prediction 1 67 - -
Ssu1g1684 574 MobiDBLite consensus disorder prediction 256 290 - -
Ssu1g1684 574 Coils Coil 407 427 - -
Ssu1g1684 574 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 574 IPR040265 -
Ssu1g1684 574 Coils Coil 137 192 - -
Ssu1g1684 574 MobiDBLite consensus disorder prediction 1 16 - -
Ssu1g1684 574 MobiDBLite consensus disorder prediction 267 285 - -
Ssu1g1684 574 MobiDBLite consensus disorder prediction 17 33 - -
Ssu1g1684 574 PANTHER F11A17.16 1 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1684 Ssu-Chr1 41046941 41051324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1684 - - gmx:100820086 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1684 1 41046941 41051324 Ssu1g1684 1 41046941 41051324 ECH
Ssu6g0506 6 7810092 7814588 Ssu1g1684 1 41046941 41051324 PCT