Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01296 ATGAagcaagagtcaccagcatcactagaagcagcagcagcaacaacaacaacaccaaaaaGTGTGATCAAGCTTCAGAACAGTTTAACTCCATCACGTTTAAGACTTCCTTCCAATTACAAAGAGCCTCCAAAGACTCCACCCGAGGTTGTCAATGGGGTGGTGTCAACACCTTCAAGGAGAGCCAAGTCTGTGACTCCAGAGTTGAAGCACAATTCAAGGGTCAAAAGGGGTCTTGTGATGAACAAGGCCAAGCCCAATGAAGAGGTTGTGGGAAACCAAAGGGGCAGGGAAGTTGAAGAGGCTAAGGTTGTGGCACGTTTTGTGAGTCGGCATGTTGTGGAACAGTTTTCTAGGCCAAGGAGTGGGGATTTTGGTTTCAAGAGGGACAAGGAGGACCCTGATGGGAAGAATAAGAAGGAATTGATGGAGAAGCTTGTGGTGAGTGAGAGTTTGATCAAGAATCTGCAGTCTGAAGTGCTGGCTTTGAAAGCTGAATTGGAGAAAGTTAAGGGCTTGAACGTGGAGCTGGAGTCTAACAACAGGAAACTCACTCGGGATCTTGCTGCTGCTGAAGCAAAGGTGGTGTCTTTGGGTAGCAATGAGAAGGAACCAAATGGAGAACATCAGAACCCCAAGTTTAAACACATTCAGAAACTCATTGCTGACAAATTGGAACGGTCCATAGTGAAAAAGGAAGCCAGCACTGATGGATGCTTTGTTAAAGCACCAATTCCAGCACCAACAGCAATTCCTAGTGTTCCTGATAAAATAACTACAAGTATAGGAAGAAAACCTGTACCAAACTCATGCTTGccaccaccaccaccaccgataccaccatcaATCCCTTCTAGGCCAATAGCAAAAGCGAATAATTCCCAAAGGGCCCCTGCATTTGTGAAATTATTTCACTCATTGAAGAATCAAGAAGGGATGAAAAGCACAACAGGATCAATTAGACAGCAGAAACCGGTAGCTGTCAATGTACACAGCAGCATTGTTGGAGAAATTCAGAACCGTTCTGCTCATCTTTTAGCAATAAGGGCAGACATTGAAACAAAAGGAGAGTTCATTAATAGCCTTATAAAAAAGGTGGTAGAAGCGGCCTACACCAATATTGAAGATGTCTTAAATTTTGTCAATTGGCTGGATGGTGAACTTTCATCATTGGCAGATGAGCGTGCAGTTTTGAAGCATTTTAATTGGCCTGAGAGGAAAGCTGATGCCATGCGTGAAGCTGCAGTTGAGTATCGCGAAATTAAATTGTTAGAACAAGAGATTTCCTCCTTCAAGGATGACCCTGAAATTCCATGTGGAGTTTCCTTGAGAAAGATGGCCAACCTATTAGACAAGTCTGAGTGCAGCATACAGAGGCTAATCAAGTTGCGAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTTCATGGATGCTTGATTCAGGAATCATGACCAAGATTAAGCAGGCTTCTATGCTTTTGGTCAAGATGTACATGAAAAGATTGAGAATGGAGCTTGGATCTGCTCGGAACTCAGACAGACAATCTAGTCAAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAGAGCTCATCAGATTGCTGGAGGTTTGGATGCAGAAACTTTGTGTGCTTTTGAAGAGATAAGGCAACACGTGCCAGCAGGACACTTGGCAGGGTCTCCAGAACTTTTGGCTGGAATAGCATCATCATGA 1728 0.4132 MKQESPASLEAAAATTTTPKSVIKLQNSLTPSRLRLPSNYKEPPKTPPEVVNGVVSTPSRRAKSVTPELKHNSRVKRGLVMNKAKPNEEVVGNQRGREVEEAKVVARFVSRHVVEQFSRPRSGDFGFKRDKEDPDGKNKKELMEKLVVSESLIKNLQSEVLALKAELEKVKGLNVELESNNRKLTRDLAAAEAKVVSLGSNEKEPNGEHQNPKFKHIQKLIADKLERSIVKKEASTDGCFVKAPIPAPTAIPSVPDKITTSIGRKPVPNSCLPPPPPPIPPSIPSRPIAKANNSQRAPAFVKLFHSLKNQEGMKSTTGSIRQQKPVAVNVHSSIVGEIQNRSAHLLAIRADIETKGEFINSLIKKVVEAAYTNIEDVLNFVNWLDGELSSLADERAVLKHFNWPERKADAMREAAVEYREIKLLEQEISSFKDDPEIPCGVSLRKMANLLDKSECSIQRLIKLRNSAMRSYQEYKIPTSWMLDSGIMTKIKQASMLLVKMYMKRLRMELGSARNSDRQSSQESLLLQGMHFAYRAHQIAGGLDAETLCAFEEIRQHVPAGHLAGSPELLAGIASS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01296 575 MobiDBLite consensus disorder prediction 1 35 - -
Cca08g01296 575 Coils Coil 407 427 - -
Cca08g01296 575 PANTHER F11A17.16 1 575 - -
Cca08g01296 575 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 575 IPR040265 -
Cca08g01296 575 MobiDBLite consensus disorder prediction 1 71 - -
Cca08g01296 575 Coils Coil 139 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01296 Cca-Chr8 38986018 38991678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01296 - - gmx:100820086 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01296 08 38986018 38991678 Cca08g01296 08 38986018 38991678 ECH
Cca11g02620 11 53419966 53425209 Cca08g01296 08 38986018 38991678 PCT