Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1162 ATGGCGAAATCCGCGATAAATTTGAGCCCTAGCAACTGTAATACTTTTGCTTTGGATCTAATGGCTCCAATTCGCTCTAGTGGGTTTATTGATCCTGGTTGGGATCATGGCATTGCGCAAGATGAGCGGAAAAAGAAGGTTAGATGCAATTACTGTGGGAAAATAGTTAGTGGTGGGATCTATAGATTAAAGCAGCATTTAGCCCGGGTTTCTGGTGAAGTAACATACTGTGAAAAGGCCCCTGAGGAAGTCTACCTAAAAATGAAGGAAAACCTGGAAGGGTGCCGCTCCAGTAAGAAGCAAAAACAAGTTGATTCACAAGCATATATGAATTTTCACTCTAATGATGATGAAGACGATGAGGAGCAAGTTGGATGTAGAGGCAAAGGGAAGCAATTGATGGATGATACAAATGTATCTGTAAATTTAACGACTCTTCGGTCATTAGGATATGTTGACCCTGGGTGGGCACATGGTGTTGCTCAGGATGAGAGAAAAAAGAAAGTCAAATGCAATTACTGTGAGAAAGTTGTTAGTGGAGGTATTAATCGGTTTAAACAGCATCTGGCTAGAATTCCAGGAGAGGTAGCACCTTGTAAAAGTGCCCCAGAAGAAGCTTACCTTAAAATAAAGGAGAATATGAAGTGGCATCGCACTGGAAGGAGACATAGACAATCTGAGGCTAAGGAATTAATACCTTTCTATTCAAAGTCAGATAATGAAGATGAAGAGTATGATCAAGGGGAAGATGCTTTGCATCATATGAACAAGGAAACTTTTATTGATGTTGATAAACGGTTGTCTAAGGATTTAAGAAAAAACCTGAAGGGAATGTCACCTGGTACCGGTCCTGAACCAGTATTGAGAAGATCAAGATTGGATAATGTTTACTTGAAATATCCCAACAACCCAGTGCCTCAAACTTACAAACAAATAAAAGTTAAGACAGGGCCCACTAAGAAATTACGCAAGGAAGTTATTTCTTCGATTTGCAAATTTTTTTACCATGCAGGAATTCCTTCACAAGCTGCAGACTCCCTATATTTTCATAAAATGCTGGAAGTGGTGGGTCAATATGGACAAGGACTGGTATGCCCACCCAGACAACTTATTTCTGGTCGCTTTCTGCAGGAGGAAATCAATTCCATTCAGAATTACCTTGTTGAATATAAGGCTTTCTGGGCAATTACTGGTTGTTCTATATTGGTAGATAGTTGGATAGATACCCAGGGTAGGACAATTATTAACTTTCTTGTTTCTTGTCCTCATGGTGTATATTTTGTCTCTTCCGTTGATGCCACAAATGTGGTAGAAGATGCACCAAATTTATTTAAGCTTCTGGACAAAATTGTGGAAGAAATAGGTGAGGAAAATGTAGTGCAGGTAATCACTGAAAATACTTCCAGCTACAAAGCTGCTGGAAAAATGCTGGAAGAGAAGAGAAGGAATTTATTCTGGACCCCTTGTGCCACTTATTGTACTAATCAAGTGCTTGAAGATTTTATGAAGATAAGATGTGTGAGAGAATGCATGGAAAAGGGCCAGAAAATTACAAAATTAATATATAATCAAACATGGTTGTTAAATCTTATGAAAAGCGAATTTACTCTAGGGCAGGATCTTCTAAAGCCAGCTGGTAGTCGGTATGCTTCTAACTTCGCTACATTGCAGAGCTTGGTGGATCATCGAGTTGGTCTCAGACAAATGTTTCTATCAAACAAATGGATTTCATCCAGGTTCTCCAGAACAAGTGAGGGAAAAGAGGTGGAAAAGATTGTTTTGAATGTCACATTTTGGAAGAAAATGCATTATGTTAGGAGGTCAGTAGATCCCATAATGCAAGTGCTTCAAAAGGTTTGTAATGGTGAGAGCCTGTCAATGCCGTACATATATAATGATATGTACAGGGCAAAACTCGCCATCAAATCTGTTCATGGTGAAGATGCACGGAAATATGAACCGTTTTGGAAGGTGATAGATAACCATTGGAACTCTTTGTTTTGTCATCCTCTTTACTTGGCTGCATACTTCTTAAATCCATCATACAGATATCGTCAGGATTTTGTGCCGCATTCTGAGGTAGTACGAGGGCTCAATGAATGCATTGTTAGGCTGGAGCCAGATAATATGAGACGAATATCTGCATCAATGCAAATTTCTCATTATAATTCTGCACAAGATGACTTTGGAACTGAATTGGCAATTAGCACAAGAACAGGTCTTGAACCAGCTGCTTGGTGGCAGCAACATGGAATAAGTTGCTTAGAATTGCAAAGAATAGCTGTGCGCATATTAAGTCAGACATGCTCATCCTTTGTGTGTGAGCATGGTTGGAGTATATATGATCAGATATACAGCAAAAGACAAAATCGTATATCTCAGAAGAAACTGGATGACATTATCTATGTTCACTACAACTTGCGACTTAGAGAATGCCAATTAAGAAAAAGGTCCAGGGACTCAAAGTTGACCTCTATTGACAGTTTTCTTCAAGAGCATTTACTCAGTGATTGGGTACTTGATGCCAATTTGCAAGGCTCTGATTGTGACAAGGTAACTGAGGGCATTCTATTCCTGTTGATTGTGATGAACTGA 2595 0.3931 MAKSAINLSPSNCNTFALDLMAPIRSSGFIDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLEGCRSSKKQKQVDSQAYMNFHSNDDEDDEEQVGCRGKGKQLMDDTNVSVNLTTLRSLGYVDPGWAHGVAQDERKKKVKCNYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEAYLKIKENMKWHRTGRRHRQSEAKELIPFYSKSDNEDEEYDQGEDALHHMNKETFIDVDKRLSKDLRKNLKGMSPGTGPEPVLRRSRLDNVYLKYPNNPVPQTYKQIKVKTGPTKKLRKEVISSICKFFYHAGIPSQAADSLYFHKMLEVVGQYGQGLVCPPRQLISGRFLQEEINSIQNYLVEYKAFWAITGCSILVDSWIDTQGRTIINFLVSCPHGVYFVSSVDATNVVEDAPNLFKLLDKIVEEIGEENVVQVITENTSSYKAAGKMLEEKRRNLFWTPCATYCTNQVLEDFMKIRCVRECMEKGQKITKLIYNQTWLLNLMKSEFTLGQDLLKPAGSRYASNFATLQSLVDHRVGLRQMFLSNKWISSRFSRTSEGKEVEKIVLNVTFWKKMHYVRRSVDPIMQVLQKVCNGESLSMPYIYNDMYRAKLAIKSVHGEDARKYEPFWKVIDNHWNSLFCHPLYLAAYFLNPSYRYRQDFVPHSEVVRGLNECIVRLEPDNMRRISASMQISHYNSAQDDFGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFVCEHGWSIYDQIYSKRQNRISQKKLDDIIYVHYNLRLRECQLRKRSRDSKLTSIDSFLQEHLLSDWVLDANLQGSDCDKVTEGILFLLIVMN 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1162 864 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 26 68 - -
Lal21g1162 864 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 65 832 - -
Lal21g1162 864 Pfam BED zinc finger 156 191 IPR003656 GO:0003677
Lal21g1162 864 Pfam BED zinc finger 34 69 IPR003656 GO:0003677
Lal21g1162 864 SUPERFAMILY Ribonuclease H-like 391 809 IPR012337 -
Lal21g1162 864 PANTHER OSJNBA0013A04.12 PROTEIN 26 68 - -
Lal21g1162 864 PANTHER OSJNBA0013A04.12 PROTEIN 65 832 - -
Lal21g1162 864 Pfam Protein of unknown function (DUF 659) 366 517 IPR007021 -
Lal21g1162 864 ProSiteProfiles Zinc finger BED-type profile. 28 84 IPR003656 GO:0003677
Lal21g1162 864 ProSiteProfiles Zinc finger BED-type profile. 150 206 IPR003656 GO:0003677
Lal21g1162 864 Pfam hAT family C-terminal dimerisation region 736 807 IPR008906 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1162 Lal-Chr21 14257960 14264915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1162 - - gmx:100814604 1535.39