Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00551 ATGAAAAGTTCCAAACTTTACCCTCGAATTACACATAAACCATTACTCAGTTTTCTTCAGCTTCTCAGATTTAAGGACTCGTACCTCCAGAACCAGGTTGTCATGGCTGCCAAGAAGGCGTGTGAGTCATTCTCAAAGTCTTTGATTGAGGAAGTGCATAGATGGGGTTGCTTGAAGCAGACAGGAGTAAGTCTGAGGTACATGATGGAGTTTGGGTCCAAACCCATTTCCAAGAATTTGCTGATTTCTGCTCAGTTTCTTCACAAAGAGCTAGCCATTAGAATTGCCAGAAGAGCTATTGAACTTGAGAATCTTCCCTATGGTTTGTCTCAAAAGCCTGCTATTTTGAAGGTTAGGGATTGGTATCTGGATTCTTTCCGTGATCTCAGAGCCTTCCCTGATATCAAGAATATGAACGATGAAAGAGAGTTCACTGAAATGATCAAGGCCATCAAAGTGAGACACAACAATGTGGTTCCCACAATGGCCTTGGGTGTTCAGCAATTGAAGAAAGGAATGGATCCAAAGATTGTTTACGAAGATCTTGTCGAGATTCACCAGTTCCTTGATCGCTTTTACATGTCAAGAATTGGGATCCGAATGCTTATCGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCACCCTTTGTCGTTGGTTATATACACACAAAAATGTCTCCTGTGGAGGTGGCCACGAATGCCAGTGAGGATGCTCGTGCTATATGTTGTCGTGAATATGGAAGTGCCCCTGATGTCCGAATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGAACGTTTTATGGATTCTGATAAAGTTGCACCCCCCATTAGAATCATAGTTGCTGATGGGATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATTCCAAGAAGTGGTTTGCCTAAAATTTTTACATATCTATATAGTACAGCCAAAAATCCATTGGATGAGCATTCAGATCTTGGAATAGGTGAGAATGTGACAATGGCTGGATATGGATATGGACTTCCCATTAGTCGCCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATAATCTCTATGGAAGGATATGGTGCGTTGGCTATTCTTCCACTTTTTTTCTAA 1185 0.4194 MKSSKLYPRITHKPLLSFLQLLRFKDSYLQNQVVMAAKKACESFSKSLIEEVHRWGCLKQTGVSLRYMMEFGSKPISKNLLISAQFLHKELAIRIARRAIELENLPYGLSQKPAILKVRDWYLDSFRDLRAFPDIKNMNDEREFTEMIKAIKVRHNNVVPTMALGVQQLKKGMDPKIVYEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPFVVGYIHTKMSPVEVATNASEDARAICCREYGSAPDVRIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDKVAPPIRIIVADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAKNPLDEHSDLGIGENVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGALAILPLFF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00551 394 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase mitochondrial 225 393 - -
Vimu10g00551 394 PANTHER PYRUVATE DEHYDROGENASE KINASE 41 390 IPR039028 GO:0004672
Vimu10g00551 394 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 268 385 IPR003594 -
Vimu10g00551 394 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 50 213 IPR036784 -
Vimu10g00551 394 ProSiteProfiles Histidine kinase domain profile. 270 394 IPR005467 -
Vimu10g00551 394 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 225 392 IPR036890 -
Vimu10g00551 394 Gene3D - 37 215 IPR036784 -
Vimu10g00551 394 SMART HKATPase_4 265 394 IPR003594 -
Vimu10g00551 394 PRINTS Bacterial sensor protein C-terminal signature 356 374 IPR004358 GO:0016310|GO:0016772
Vimu10g00551 394 PRINTS Bacterial sensor protein C-terminal signature 310 324 IPR004358 GO:0016310|GO:0016772
Vimu10g00551 394 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase, mitochondrial 40 217 - -
Vimu10g00551 394 Gene3D - 225 393 IPR036890 -
Vimu10g00551 394 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 62 222 IPR018955 -
Vimu10g00551 394 CDD HATPase_PDK-like 227 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00551 Vimu-Chr10 4518525 4521580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00551 K00898 - gmx:100785344 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00551 10 4518525 4521580 Vimu10g00551 10 4518525 4521580 ECH