Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00549 ATGGCTCCAATACGTTCCACTGGATTTGTTGATCCTGGTTGGGATCATGGCATAGCCCAGGACGAGCGGAAAAAGAAGGTTAGATGCAATTACTGTGGCAAAATTGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCTCGAGTTTCAGGGGAAGTAACATACTGTGAAAAGGCTCCTGATGAAGTCTACCTAAAAATGAAGGAAAATCTTGAAGGCTGTCGTTCCCATAAAAAACAAAAGCAAGTTGATGCACAAGCATACATGAATTTTCACTCAAATGATGATGAAGATGAGGAAGAGCAAGTTGGGAGTAGAAGCAAAGGTAAGCAATTGATGGATGATCGAAATGTATCTGTAAATTTGACTCCTCTTCGCTCCTTAGGATATGTTGACCCAGGCTGGGAACATGGTGTTGCTCAAGACGAGAGAAAGAAGAAAGTTAAATGCAATTACTGTGAGAAAATTGTTAGTGGTGGTATAAATCGGTTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAATGCTCCAGAAGAAGTTTATCAGAAAATAAAAGAGAATATGAAATGGCATCGTACTGGGAGGAGACTTAGGCGACCTGAGGCTAAGGAACTGATGCCTTTCTATGCAAAATCCGACAATGATGATGATGAGTTTGAACAAGTAGAAGATGCTTTGCATCATATGAACAAAGAAACTTTGATGGATGTTGATAAGAGATTCTCTAAAGATGTACTGAAGACCTTCAAGGGAATGCCACCCAGTACTGGTCCTGAACCTTTATTGAGAAGATCAAGATTGGATAATGTTTACCTGAAATTGCCCAAGAATCAGATTCCTCAAACTTACAAACAAATAAAAGTTAAGACAGGGCCCACTAAGAAATTACGAAAGGAAGTTATTTCTTCAATTTGCAAATTCTTTTACCATGCAGGGATACCTGTACAGGCTGCAGACTCTCTGTATTTTCATAAAATGCTGGAAATGGTTGGTCAATATGGACCAGGACTGATATGCCAACCAAGCCAACTAATGTCTGGCCGCTTTTTGCAGGAGGAAATCAATTCTATTAAAAGTTACCTTGTTGAATACAAGGCTTCCTGGGCAGTTACTGGTTGCTCTATAATGGCAGATAGTTGGATAGATAAACAGGGTAGGACAATCGTTAACTTTCTGGTTTCTTGTCCTCATGGTGTATACTTTGTTTCTTCAGTTGATGCCACTAATGTAATAGAAGATGCACCGAATTTATTTAAGCTTCTCGACAAAGTAGTGGAAGAAGTAGGTGAGGAAAATGTAGTGCAGGTAATAACCGAAAATACTCCTAACTATAAAGCTGCTGGAAAAATGCTCGAAGAGAAGAGAAGGAATTTGTTCTGGACCCCTTGTGCCACTTATTGTATTAATCGAATGCTTGAAGATTTTTTGAAAATAAGATGCGTGGAAGAGTGCATGGAAAAGGGTCAAAAAATTACAAAACTAATTTACAATCAAATATGGTTGTTAAATCTTATGAAAAGTGAGTTCACCGAGGGGCAGGAGCTTCTAAAACCAGCCACCACCCGGTTTGCCTCTAGCTTTGCTACACTACAGAGCTTGTTAGATCATAGAGTTGGTCTCAGAAGAATGTTTCTTTCCAATAAATGGATTTTGTCCAGATTCTCCAGCTCAAATGAGGGGAAAGAGGTGGAAAAAATTGTTTTGAATGTTACATTTTGGAAGAAAATGCAGTATGTTAGGAAGTCAATAGATCCGATAATGCAAGTACTAAAAAAACTTTATAGTGGTGAGGGCTTGTCAATGCCATATATATATAACGATATGTACAGGGCAAAATTTGCAATCAAATCTGTTCACGGTGATGATGCACGTAAATATGAACCCTTCTGGAAGGTGATAGATAGTCATTGGAACTCTCTGTTCTGTCACCCTCTTTATTTGGCTGCATACTTCTTAAACCCCTCATACAGATATCGTCAGGATTTTGTGCCGCATTCTGAGGTAGTACGAGGGCTCAATGAATGCATTGTTCGGCTGGAGTCAGATAACATGAGACGGATATCTGCATCAATGCAGATAGCTCATTATAATTCTGCACAAGATGACTTTGGAACTGAATTGGCAATTAGCACAAGAACTGGTCTAGAACCAGCTGCTTGGTGGCAACAACACGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCTGTACGGATATTAAGTCAGACATGCTCGTCCTTTGCATGTGAGCATGATTGGAGTATATATGACCAGATACATTGCAAAAGACAAAATCGTCTATCTCAGAAAAAATTGAATGACGTTATATATGTTCACTACAATTTGCGACTTAGAGAAAGCCAACTAAGAAAAAGGTCCAGGGACTCAAAGTTGTCCTCTGTTGACAGTGTTCTGCAGCAAGCTCATTTACTTGATGATTGGATAATAGATGATAATGTACAAAGCTCTGATGTTGATAAGAATATTCTTTTTGGAGTTGAACTAGATGATGAATATGAAAATGATTCAATTGATTACGATGATGGAAGTGCTAGGTCTCTAAAGGGATCCCTTGAGCTGGTGACTATGGCTGACTTAGCTGTAGGGTCACCAGATGTAGATCATGCTAACATGGATGCTGCAACTGATGATGAGTCTGATATGAATTATTTTGATGATGATTTGAGCGAGTAA 2709 0.3891 MAPIRSTGFVDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPDEVYLKMKENLEGCRSHKKQKQVDAQAYMNFHSNDDEDEEEQVGSRSKGKQLMDDRNVSVNLTPLRSLGYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKNAPEEVYQKIKENMKWHRTGRRLRRPEAKELMPFYAKSDNDDDEFEQVEDALHHMNKETLMDVDKRFSKDVLKTFKGMPPSTGPEPLLRRSRLDNVYLKLPKNQIPQTYKQIKVKTGPTKKLRKEVISSICKFFYHAGIPVQAADSLYFHKMLEMVGQYGPGLICQPSQLMSGRFLQEEINSIKSYLVEYKASWAVTGCSIMADSWIDKQGRTIVNFLVSCPHGVYFVSSVDATNVIEDAPNLFKLLDKVVEEVGEENVVQVITENTPNYKAAGKMLEEKRRNLFWTPCATYCINRMLEDFLKIRCVEECMEKGQKITKLIYNQIWLLNLMKSEFTEGQELLKPATTRFASSFATLQSLLDHRVGLRRMFLSNKWILSRFSSSNEGKEVEKIVLNVTFWKKMQYVRKSIDPIMQVLKKLYSGEGLSMPYIYNDMYRAKFAIKSVHGDDARKYEPFWKVIDSHWNSLFCHPLYLAAYFLNPSYRYRQDFVPHSEVVRGLNECIVRLESDNMRRISASMQIAHYNSAQDDFGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDWSIYDQIHCKRQNRLSQKKLNDVIYVHYNLRLRESQLRKRSRDSKLSSVDSVLQQAHLLDDWIIDDNVQSSDVDKNILFGVELDDEYENDSIDYDDGSARSLKGSLELVTMADLAVGSPDVDHANMDAATDDESDMNYFDDDLSE 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00549 902 PANTHER OSJNBA0013A04.12 PROTEIN 20 85 - -
Vimu10g00549 902 SUPERFAMILY Ribonuclease H-like 377 789 IPR012337 -
Vimu10g00549 902 ProSiteProfiles Zinc finger BED-type profile. 8 64 IPR003656 GO:0003677
Vimu10g00549 902 Pfam hAT family C-terminal dimerisation region 716 787 IPR008906 GO:0046983
Vimu10g00549 902 MobiDBLite consensus disorder prediction 92 113 - -
Vimu10g00549 902 ProSiteProfiles Zinc finger BED-type profile. 130 186 IPR003656 GO:0003677
Vimu10g00549 902 Pfam Protein of unknown function (DUF 659) 349 497 IPR007021 -
Vimu10g00549 902 Pfam BED zinc finger 136 171 IPR003656 GO:0003677
Vimu10g00549 902 Pfam BED zinc finger 14 49 IPR003656 GO:0003677
Vimu10g00549 902 MobiDBLite consensus disorder prediction 878 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00549 Vimu-Chr10 4509895 4513100 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00549 - - gmx:100814604 1711.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00549 10 4509895 4513100 Vimu10g00549 10 4509895 4513100 ECH