Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1928 ATGGCTCCAGGACGCTCCACTGGGTTTATTGATCCTGGTTGGGATCATGGTATTGCTCAAGATGAGCGGAAAAAGAAGGTTAGGTGCAATTATTGTGGGAAAATAGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAGTAACATACTGTGAAAAAGCTCCTGAGGAAGTCTACCTAAGAATGAAGGAGAACCTGGAAGGATGTCGTCCCAACAAGAAACAAAAGCAAGTTGATGTGCAATCATATATGAATTTTGGCTCTAATGATGATGAAGACGACGATGAGCAAGTTGGGTGTCGAAGCAAAGGGAAGCAATTGATGGATGATAGAAATGTAGCTGTAAATTTAACTCCTCTTAGGTCCCTAGGATATATTGACCCAGGGTGGGAACATGGTGTTGCTCAGGATGAGAGAAAGAAGAAAGTAAAATGCAATTACTGTGAGAAAGTTGTTAGTGGAGGTATTAATCGATTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAAGGCTCCAGAAGAAGTTTATCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAGGAGACACAGGAGACCTGAGGCTAAGGAGTTGATGCCTTCCTATGCAAAGTCTGATGATGAAGATGATGAGTATGAGCAAGAGGAAGATGCTTTGCATCATATGAACAAGGAAACTTTCATTGATGTTGACAAGAGATTCTCTAAAGATTTAATGAAGACCTTCAAAGGTATTTCACCTAGTACTTGTCCTGAACCAGTATTGAGAAGATCAAGATTAGATAATGTTTACCTGAAACTGCCCAAGAATCAGACTCCTCAAACATACAAACCTGGAAAAGTTAAGACGGGCCCCACCAAGAAATCACGCAGGGAAGTTTTTTCTACAATATGCAAGTTCTTTTACCATGCGGGAATTCCCGTACAGGCTGCTGACTCCCTATATTTTCATAAAATGCTGGAAGCAGTTGGTCAATATGGACAAGGACTGGTATGCCCTCCAAGCCAACTTATTTCTGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTACCTTGTTGAATATAAGGCTTCCTGGGCAATCACTGGTTGTTCTATACTAGCAGATAGTTGGAGAGATAAACAGGGTAGGACAGTTATTAATTTTCTTGTTTCTTGTCCTCATGGTGTATACTTTGTTTCCTCAGTTGATGCCACTAATGTAGTAGAAGATGCACCAAGTTTATTTAAGCTTCTAGACAAAGTAGTGGAAGAAGTAGGTGAAGAAAATGTAGTGCAGGTAATCACTGAATATACTCCCAACTATAGAGCTGCTGGGAAAATGCTTGAAGAGAAGAGAAGGAATATATTCTGGACCCCCTGTGCCACTTATTGTATTAATAGAATGCTTGGAGATTTTCTGAAGATAAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAACTAATATACAATCAAACATGGTTGTTAAATCTTATGAAAAGTGAATTTACTGAGGGGCGGGAGCTTTTAAAGCCGGCTGGCACCCGGTATGCCTCTAGCTTTGCTACATTGCAAAGCTTGTTGGATCATCGAGTTGGTCTCAGACGAATGTTTCTTTCAAACAAATGGAATACATCCAGGTACTCCAGCTCAAGCGAGGGGAAAGAGGTGGAAAAATTTGTTTTGAGTGCCACATTTTGGAAGAAACTGCAGCATGTTTGTAAGTCAATAGATCCGATAATGCAAGTACTTCAAAAGGTTTGTAGTGGTGAGAACTTGTCAATGCCATACATATATAATGATATGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGTGACGATGCACGTAAATTTGAACCATTCTGGAAGGTAATAGACAGCCATTGGAACTCTCTGTTCTATCACCCTCTTTACTTGGCTGCTTACTTCCTTAATCCATCATACCGATATCGTCAGGATTTTGTGGCGCACTCTGAGGTAGTACGGGGGCTCAATGAATGCATTGTTCGGCTGGAGCCAGATAATATGAGACGGATCTCTGCATCAATGCAGATTTCTCATTATAACTCTGCACAAGATGATTTTGGAACTGATTTGGCGATTGGCACAAGATCAGGTCTTGAACCAGCTGCTTGGTGGCAACAACATGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCGGTACGCATATTAAGTCAGACATGCTCATCATTTGCGTGTGAGCATGATTGGAGTATATACGATCAGATATATAGCAAAAGACAAAATCGACTATCTCAGAAGAAACTGAATGACATTGTCTTCGTTCACTACAATTTGAGACTTAGAGAATGCCAAGTAAGAAAAAGGTCCAGGGACTCAAAGTCAACCTCTGTTGACAGTGTTCTACTAGAGCATTTACTCAGTGATTGGATAGTCGATGCCAATGTTCAAAGCTTTGATGGTGATAAGAATTACCCTTTTGGAGTTGAACTAGATGATGAATATGAAACCGATTCAATTGATTATGATGATGGAGCTGCAAGGCCTCTAAAGGGATCATCCCTTGAACTGGAGACTATGGATGGTGTAGCAGTAGGATCACCAGATGTAGAACATGCTAACATTGATGATGCCAGTGACGATGAGTCTGATCTGAATTATTTTCATGATGATTTGAGCGAGTAA 2709 0.4024 MAPGRSTGFIDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLRMKENLEGCRPNKKQKQVDVQSYMNFGSNDDEDDDEQVGCRSKGKQLMDDRNVAVNLTPLRSLGYIDPGWEHGVAQDERKKKVKCNYCEKVVSGGINRFKQHLARIPGEVAPCKKAPEEVYLKIKENMKWHRTGRRHRRPEAKELMPSYAKSDDEDDEYEQEEDALHHMNKETFIDVDKRFSKDLMKTFKGISPSTCPEPVLRRSRLDNVYLKLPKNQTPQTYKPGKVKTGPTKKSRREVFSTICKFFYHAGIPVQAADSLYFHKMLEAVGQYGQGLVCPPSQLISGRFLQEEINSIKNYLVEYKASWAITGCSILADSWRDKQGRTVINFLVSCPHGVYFVSSVDATNVVEDAPSLFKLLDKVVEEVGEENVVQVITEYTPNYRAAGKMLEEKRRNIFWTPCATYCINRMLGDFLKIRCVEECMEKGQKITKLIYNQTWLLNLMKSEFTEGRELLKPAGTRYASSFATLQSLLDHRVGLRRMFLSNKWNTSRYSSSSEGKEVEKFVLSATFWKKLQHVCKSIDPIMQVLQKVCSGENLSMPYIYNDMYRAKLAIKSIHGDDARKFEPFWKVIDSHWNSLFYHPLYLAAYFLNPSYRYRQDFVAHSEVVRGLNECIVRLEPDNMRRISASMQISHYNSAQDDFGTDLAIGTRSGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDWSIYDQIYSKRQNRLSQKKLNDIVFVHYNLRLRECQVRKRSRDSKSTSVDSVLLEHLLSDWIVDANVQSFDGDKNYPFGVELDDEYETDSIDYDDGAARPLKGSSLELETMDGVAVGSPDVEHANIDDASDDESDLNYFHDDLSE* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1928 902 Pfam hAT family C-terminal dimerisation region 714 787 IPR008906 GO:0046983
Lja6g1928 902 Coils Coil 218 238 - -
Lja6g1928 902 ProSiteProfiles Zinc finger BED-type profile. 8 64 IPR003656 GO:0003677
Lja6g1928 902 SUPERFAMILY Ribonuclease H-like 371 789 IPR012337 -
Lja6g1928 902 MobiDBLite consensus disorder prediction 198 224 - -
Lja6g1928 902 MobiDBLite consensus disorder prediction 875 902 - -
Lja6g1928 902 PANTHER OSJNBA0013A04.12 PROTEIN 11 48 - -
Lja6g1928 902 PANTHER OSJNBA0013A04.12 PROTEIN 43 835 - -
Lja6g1928 902 Pfam BED zinc finger 14 49 IPR003656 GO:0003677
Lja6g1928 902 Pfam BED zinc finger 136 171 IPR003656 GO:0003677
Lja6g1928 902 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 11 48 - -
Lja6g1928 902 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 43 835 - -
Lja6g1928 902 Pfam Protein of unknown function (DUF 659) 346 497 IPR007021 -
Lja6g1928 902 ProSiteProfiles Zinc finger BED-type profile. 130 186 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1928 Lja-Chr6 46986240 46992987 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1928 - - gmx:100814604 1629.38