Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01291 ATGGCTGCCAGAAAGGCCTGTGAGACATTCTCAAAATCATTGATTGAGGAAGTGAATAGATGGGGTTGCTTGAAGCAAACCGGTGTGAGTTTGAGGTACATGATGGAATTTGGGTCCAAACCTACTGATAAGAATTTGCTGATTTCTGCTCAGTTTCTTCACAAGGAGCTTGCCATTAGAATTGCCAGAAGGGCTATTGAGCTTGAGAATCTTCCCTATGGTTTGTCTCAAAAACCTGCTGTTTTAAAGGTTAGGGATTGGTATGTGGATTCTTTCCGTGATATCAGAGCCTTCCCTGACATCAAGAATATGATCGATGAAAGAGAGTTCACTGAAATGATCAAGGCCATCAAAGTGAGACACAACAATGTGGTACCCACGATGGCTTTGGGTGTTCAGCAATTGAAGAAAGGTTTGGATCCAAAGATAGTTAATGAAGATCTTGTTGAGATTCATCAGTTCCTCGACCGCTTTTACATGTCAAGAATTGGAATCCGAATGCTCATTGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCCATGTTGTGGGTTACATACATACAAAAATGTCTCCTTTGGAGTTCCGATCTAGGAATGCCAGTGAGGATGCACGTGCTATATGTTGCCGTGAATATGGAAGTGCCCCTGATGTACATATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGATTCTGATAAAGTTTCACCTCCCATTAGAATAATAGTTGCTGATGGGATAGAGGATGTTACCATAAAGGTCTCAGATGAAGGAGGTGGAATACCAAGAAGTGGTCTGCCAAAGATTTTTACATATCTATATAGTACAGCCAGAAACCCTTTGGATGAGCATTCGGATCTTGGAATAGCTGATAGTGTGACAATGGCTGGATATGGATATGGACTTCCTATTAGTCGCCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATAATCTCCATGGAAGGATATGGGACTGATGCATATCTCCATTTGTCTCGTTTGGGAGATTCACAAGAACCTTTGCCTTGA 1113 0.4205 MAARKACETFSKSLIEEVNRWGCLKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELAIRIARRAIELENLPYGLSQKPAVLKVRDWYVDSFRDIRAFPDIKNMIDEREFTEMIKAIKVRHNNVVPTMALGVQQLKKGLDPKIVNEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHVVGYIHTKMSPLEFRSRNASEDARAICCREYGSAPDVHIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDKVSPPIRIIVADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEHSDLGIADSVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01291 370 Gene3D - 198 369 IPR036890 -
Cca08g01291 370 Gene3D - 3 183 IPR036784 -
Cca08g01291 370 PANTHER BNAA05G30880D PROTEIN 10 370 - -
Cca08g01291 370 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 235 360 IPR003594 -
Cca08g01291 370 CDD HATPase_PDK-like 200 360 - -
Cca08g01291 370 ProSiteProfiles Histidine kinase domain profile. 237 363 IPR005467 -
Cca08g01291 370 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 210 359 IPR036890 -
Cca08g01291 370 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 179 IPR036784 -
Cca08g01291 370 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 189 IPR018955 -
Cca08g01291 370 PANTHER PYRUVATE DEHYDROGENASE KINASE 10 370 IPR039028 GO:0004672
Cca08g01291 370 PRINTS Bacterial sensor protein C-terminal signature 277 291 IPR004358 GO:0016310|GO:0016772
Cca08g01291 370 PRINTS Bacterial sensor protein C-terminal signature 323 341 IPR004358 GO:0016310|GO:0016772
Cca08g01291 370 PRINTS Bacterial sensor protein C-terminal signature 347 360 IPR004358 GO:0016310|GO:0016772
Cca08g01291 370 SMART HKATPase_4 232 363 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01291 Cca-Chr8 38861293 38864692 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01291 K00898 - gmx:100814079 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01291 08 38861293 38864692 Cca08g01291 08 38861293 38864692 ECH