Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1927 ATGGCTGCAAAGAAGGCCTGTGAGACATTCTCCAAGGCCTTGATGGAGGATGTGCACAGATGGGGTTGTATGAAGCAAACAGGGGTGAGTTTGAGGTACATGATGGAATTTGGGTCAACACCTACTGAGAAGAATTTGCTGATCTCTGCTCAGTTTCTTCACAAGGAGCTTGCAATCAGGATTGCTAGGAGAGCAATTGAGCTTGATAGTCTTCCCTATGGTTTGTCTAAGAAACCTGCTGTTATAAAGGTTAGGGATTGGTATGTGGATTCTTTCCGTGATCTTAGGTCGTACCCTGACATCAAGAACATGACTGATGAAAAAGATTTCACTGAAATGATCAAGGCCATCAAAGTGAGACACAACAATGTGGTACCTACAATGGCCTTAGGTGTTCAGCAATTGAAGAAAGGTATGGATCCAAAGATTGTATATGAAGACCTTATTGAGATTCATCAGTTTCTCGATCGCTTTTACATGTCAAGAATTGGAATCCGCATGCTCATTGGGCAGCATGTGGAGTTGCACAATCCCAATCCAGCTCCCCATTGCATAGGTTATATACATACAAAAATGTCTCCTGTGGAGGTGGCGAGGAATGCCAGTGAGGATGCACGCTCTATATGTTGTCGTGAATATGGCAGTGCCCCTGATGTTCAAATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCGGCTCACTTGCATCTTATGGTATTTGAGTTGGTCAAAAACTCACTGCGTGCTGTCCAAGAGCGTTTTATAGATTCTGATAACGTTGCACCTCCTGTTAGAATAATAGTTGCTGACGGGTTAGAGGATGTTACCATAAAGGTTTCAGATGAGGGAGGTGGAATACCAAGAAGTGGTCTGCCGAAAATTTTTACATATCTATACAGTACAGCCAGAAACCCATTGGATGAGCATGAGGATCTTGGATTAGGTGATAATGTGACAATGGCTGGATATGGATATGGAATTCCTATTAGTCGCCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATAATCTCTATGGAAGGATATGGAACTGATGCATATCTTCATTTGTCTCGTCTGGGAGATTCACAAGAACCATTGCCCTGA 1110 0.4252 MAAKKACETFSKALMEDVHRWGCMKQTGVSLRYMMEFGSTPTEKNLLISAQFLHKELAIRIARRAIELDSLPYGLSKKPAVIKVRDWYVDSFRDLRSYPDIKNMTDEKDFTEMIKAIKVRHNNVVPTMALGVQQLKKGMDPKIVYEDLIEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPAPHCIGYIHTKMSPVEVARNASEDARSICCREYGSAPDVQIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFIDSDNVAPPVRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEHEDLGLGDNVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1927 369 PRINTS Bacterial sensor protein C-terminal signature 322 340 IPR004358 GO:0016310|GO:0016772
Lja6g1927 369 PRINTS Bacterial sensor protein C-terminal signature 346 359 IPR004358 GO:0016310|GO:0016772
Lja6g1927 369 PRINTS Bacterial sensor protein C-terminal signature 276 290 IPR004358 GO:0016310|GO:0016772
Lja6g1927 369 Gene3D - 3 183 IPR036784 -
Lja6g1927 369 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 190 358 IPR036890 -
Lja6g1927 369 ProSiteProfiles Histidine kinase domain profile. 236 362 IPR005467 -
Lja6g1927 369 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 179 IPR036784 -
Lja6g1927 369 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 359 IPR003594 -
Lja6g1927 369 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 189 IPR018955 -
Lja6g1927 369 Gene3D - 191 368 IPR036890 -
Lja6g1927 369 SMART HKATPase_4 231 362 IPR003594 -
Lja6g1927 369 PANTHER PYRUVATE DEHYDROGENASE KINASE 10 369 IPR039028 GO:0004672
Lja6g1927 369 CDD HATPase_PDK-like 193 359 - -
Lja6g1927 369 PANTHER BNAA05G30880D PROTEIN 10 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1927 Lja-Chr6 46980442 46983819 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1927 K00898 - gmx:100785344 704.131